exonerate-protein2genome-gff-to-fasta.pl: Use of uninitialized value $orientation in string eq at exonerate-protein2genome-gff-to-fasta.pl line 90, <GFF> line 164

[Fantacooke2]

Hey

Can anyone help?

I go this error: Use of uninitialized value $orientation in string eq at exonerate-protein2genome-gff-to-fasta.pl line 90, line 164

Line 164 of my gff contains a '-'.

I am wondering why the error occurs

[Fantacooke2]

Hey

Can anyone help?

I got this error: Use of uninitialized value $orientation in string eq at exonerate-protein2genome-gff-to-fasta.pl line 90, line 164

Line 164 of my gff: genex xnt2h CDSpart 5231111 5234643 . + . src=YNT;grp=gene-ara_004913800_1;pri=6

I am wondering why the error occurs

[douglasgscofield]

Without the genome file and the first ~200 lines of your gff, it is hard to say. If you can provide those (for the fasta, at least the first sequences covered in the first ~200 lines of the gff), they would help me diagnose what the issue is. If you want to keep them confidential, you can send them to douglasgscofield@gmail.com