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CITATION.cff

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title: pdbtbx
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version: 0.8.0
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version: 0.9.0
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abstract: A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
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authors:
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- affiliation: Utrecht University

Cargo.toml

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[package]
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name = "pdbtbx"
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version = "0.8.0"
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version = "0.9.0"
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authors = ["Douwe Schulte <d.schulte@uu.nl>"]
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license = "MIT"
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edition = "2018"

README.md

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* The crate has many ways of iterating over the PDB structure to allow for convenient access and control over the performance.
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## Latest update
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### v0.8.0 'All the hierarchy'
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* Added support for residue serial numbers over 9999 and atom serial numbers over 99999 for PDB files. (Thanks to DocKDE)
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* Changed argument type of `save_pdb` from `PDB` to `&PDB`. (Thanks to DocKDE)
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* Allow lack of chain name in PDB files. (Thanks to DocKDE)
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* Added mutable structs to extend the use of `AtomWithHierarchy` alongside a refactor which created a struct for every hierarchy level. See the docs for more information.
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* Removed `Atom.pos_array()` and moved the `rstar::rtree` to use `(f64, f64, f64)` instead of `[f64; 3]`. This was made possible by the adoption of tuples as points in rstar.
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### v0.9.0 'Structured search'
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* Added `find` method on all levels in the PDB, this should allow for human friendly atom(s) searching.
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`pdb.find(Term::ConformerName("ALA".to_string()) + Term::AtomName("CA".to_string()))`
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* Added `bounding_box` to the PDB struct.
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* Added `atom.overlaps_bound()` which uses covalent bond radii instead of unbound radii. (Thanks to raised issue)
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* Extended `atomic_number` to take the first character of the name if this is one of "CHONS" and the element is unset and the name is not an element name.
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* Updated covalent bond radii to work in Å as well (was picometers).
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* Respecified the dependencies versions to allow cargo to more often reuse dependencies in complex projects.
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Also see [changelog](https://github.com/douweschulte/pdbtbx/blob/master/changelog.md).
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changelog.md

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# Changelog
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All versions are properly annotated on [github](https://github.com/douweschulte/pdbtbx/releases) so there the source code for each version can be retrieved.
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### upcoming
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* Implemented `find` method on all levels in the PDB, this should allow for human friendly atom(s) searching.
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### v0.9.0 'Structured search'
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* Added `find` method on all levels in the PDB, this should allow for human friendly atom(s) searching.
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`pdb.find(Term::ConformerName("ALA".to_string()) + Term::AtomName("CA".to_string()))`
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* Added `bounding_box` to the PDB struct.
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* Added `atom.overlaps_bound()` which uses covalent bond radii instead of unbound radii. (Thanks to raised issue)
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* Extended `atomic_number` to take the first character of the name if this is one of "CHONS" and the element is unset and the name is not an element name.
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* Respecified the dependencies versions to allow cargo to more often reuse dependencies in complex projects.
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* Updated covalent bond radii to work in Å as well (was picometers).
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* Added `atom.overlaps_bound()` which uses covalent bond radii instead of unbound radii. (Thanks to raised issue)
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* Respecified the dependencies versions to allow cargo to more often reuse dependencies in complex projects.
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### v0.8.0 'All the hierarchy'
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* Added support for residue serial numbers over 9999 and atom serial numbers over 99999 for PDB files. (Thanks to DocKDE)

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