Drizzle Kit with Deno Import Map fails with MODULE_NOT_FOUND error

[itizarsa]

In my Deno app, I have custom import paths defined in deno.json, when I run the drizzle-kit generate command it fails with a MODULE_NOT_FOUND error. How do I solve this?

# deno.json

{
	"nodeModulesDir": "auto",
	"imports": {
		"#database/": "./src/database/",
		"#entity/": "./src/entity/",
		"#exception/": "./src/exception/",
		"#util/": "./src/util/",
		"#decorator/": "./src/decorator/",
		"@types/pg": "npm:@types/pg@^8.11.11",
		"drizzle-kit": "npm:drizzle-kit@^0.30.5",
		"drizzle-orm": "npm:drizzle-orm@^0.41.0",
		"pg": "npm:pg@^8.14.1"
	},
	"tasks": {
		"db:generate": "deno -A npm:drizzle-kit generate --config ./src/database/drizzle.config.ts",
		"db:migrate": "deno -A npm:drizzle-kit migrate --config ./src/database/drizzle.config.ts"
	}
}

# drizzle.config.ts

import { defineConfig } from "drizzle-kit";

export default defineConfig({
	dialect: "postgresql",
	schema: "./src/database/schema.ts",
	out: "./src/database/migrations",
	migrations: { schema: "public" }
});

# schema.ts

import { bigint, pgTable, text } from "drizzle-orm/pg-core";
import { ContextManager } from "#util/context.ts";

export const Token = pgTable("Tokens", {
	id: bigint({ mode: "number" }).generatedAlwaysAsIdentity().primaryKey(),
	createdBy: text()
		.$defaultFn(() => ContextManager.userId)
		.notNull()
});

# Error

Error: Cannot find module '#util/context.ts'
Require stack:
- /Users/dev/repro/src/database/schema/token.ts
- /Users/dev/repro/node_modules/.deno/[email protected]/node_modules/drizzle-kit/bin.cjs
    at Module._resolveFilename (node:module:619:15)
    at Module._load (node:module:497:27)
    at Module.require (node:module:681:19)
    at require (node:module:816:16)
    at Object.<anonymous> (file:///Users/dev/repro/src/database/schema/token.ts:25:22)
    at Object.<anonymous> (file:///Users/dev/repro/src/database/schema/token.ts:34:4)
    at Module._compile (node:module:745:34)
    at Module._compile (file:///Users/dev/repro/node_modules/.deno/[email protected]/node_modules/drizzle-kit/bin.cjs:14146:30)
    at loadMaybeCjs (node:module:770:10)
    at Module._extensions..js (node:module:755:12) {
  code: "MODULE_NOT_FOUND",
  requireStack: [
    "/Users/dev/repro/src/database/schema/token.ts",
    "/Users/dev/repro/node_modules/.deno/[email protected]/node_modules/drizzle-kit/bin.cjs"
  ]
}