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Updating the stone version to 3.3.9 #406

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Run time

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Job	Run time
Docs	2m 8s
Integration (macos-latest, 3.9)	1m 24s
Integration (macos-15-intel, 3.10)	41s
Integration (macos-latest, 3.10)	47s
Integration (macos-15-intel, 3.11)	45s
Integration (windows-latest, 3.10)	1m 9s
CI (macos-15-intel, 3.9)	41s
Integration (macos-15-intel, 3.9)	48s
CI (macos-latest, 3.9)	45s
Integration (macos-latest, 3.11)	40s
CI (windows-latest, 3.11)	1m 21s
CI (ubuntu-latest, 3.10)	26s
Integration (windows-latest, 3.9)	1m 25s
CI (ubuntu-latest, 3.9)	23s
Integration (ubuntu-latest, 3.10)	34s
CI (macos-latest, 3.11)	23s
CI (macos-15-intel, 3.10)	44s
CI (macos-15-intel, 3.11)	33s
Integration (ubuntu-latest, 3.9)	42s
CI (ubuntu-latest, 3.11)	27s
CI (windows-latest, 3.10)	1m 40s
CI (macos-latest, 3.10)	49s
CI (windows-latest, 3.9)	1m 18s
Integration (windows-latest, 3.11)	1m 15s
Integration (ubuntu-latest, 3.11)	35s
	22m 23s