Issue with genome fasta header format

[acontrerasg]

dear Hajk,

I noticed that, under certain headers formats, in my case:

Chr1
Chr2
Chr3
Chr4
Chr5
Chr6
Chr7
Scaffold_1
Scaffold_2
Scaffold_3

The tool chops out part of the genomic scaffold name after the underscore in the gff and bed result files, being imposible to correctly locate the position of the predicted LTR transposon.

Changing header names seems to fix the issue.

Chr1
Chr2
Chr3
Chr4
Chr5
Chr6
Chr7
Scaffold1
Scaffold2
Scaffold3

Thanks