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.github/workflows/test_benchmark_collection_models.yml

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@@ -132,7 +132,7 @@ jobs:
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&& python3 -m pip install -U sympy \
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&& python3 -m pip install git+https://github.com/ICB-DCM/fiddy.git@amici100
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- run: pip uninstall -y diffrax && pip install git+https://github.com/patrick-kidger/diffrax@dev # TODO FIXME https://github.com/patrick-kidger/diffrax/issues/654 + event dirs
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- run: pip uninstall -y diffrax && pip install git+https://github.com/patrick-kidger/diffrax@main # TODO FIXME https://github.com/patrick-kidger/diffrax/issues/654 + event dirs
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- name: Download benchmark collection
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run: |

scripts/installAmiciSource.sh

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@@ -38,7 +38,7 @@ python -m pip install --upgrade pip wheel
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# The latter is necessary for code coverage to work.
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python -m pip install --upgrade pip setuptools cmake_build_extension==0.6.0 numpy petab swig
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python -m pip install git+https://github.com/pysb/pysb@master # for SPM with compartments
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python -m pip install git+https://github.com/patrick-kidger/diffrax@dev # for events with direction
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python -m pip install git+https://github.com/patrick-kidger/diffrax@main # for events with direction
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python -m pip install optax # for jax petab notebook
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AMICI_BUILD_TEMP="${AMICI_PATH}/python/sdist/build/temp" \
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python -m pip install --verbose -e "${AMICI_PATH}/python/sdist[petab,test,vis,jax]" --no-build-isolation

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