review

dweindl · dweindl · commit fc31a504d550 · 2024-12-18T19:14:30.000+01:00
diff --git a/petab/v2/C.py b/petab/v2/C.py
@@ -22,6 +22,9 @@
 #: Time value that indicates steady-state measurements
 TIME_STEADY_STATE = _math.inf
 
+#: Time value that indicates pre-equilibration in the experiments table
+TIME_PREEQUILIBRATION = -_math.inf
+
 #: Observable parameters column in the measurement table
 OBSERVABLE_PARAMETERS = "observableParameters"
 
diff --git a/petab/v2/petab1to2.py b/petab/v2/petab1to2.py
@@ -131,7 +131,7 @@ def create_experiment_id(sim_cond_id: str, preeq_cond_id: str) -> str:
                     {
                         v2.C.EXPERIMENT_ID: exp_id,
                         v2.C.CONDITION_ID: preeq_cond_id,
-                        v2.C.TIME: float("-inf"),
+                        v2.C.TIME: v2.C.TIME_PREEQUILIBRATION,
                     }
                 )
             experiments.append(

Original file line number	Diff line number	Diff line change
`@@ -131,7 +131,7 @@ def create_experiment_id(sim_cond_id: str, preeq_cond_id: str) -> str:`
`131`	`131`	`{`
`132`	`132`	`v2.C.EXPERIMENT_ID: exp_id,`
`133`	`133`	`v2.C.CONDITION_ID: preeq_cond_id,`
`134`		`- v2.C.TIME: float("-inf"),`
	`134`	`+ v2.C.TIME: v2.C.TIME_PREEQUILIBRATION,`
`135`	`135`	`}`
`136`	`136`	`)`
`137`	`137`	`experiments.append(`