Add Krithikas updates

Author: briandesilva

docs/JOSS/paper.bib

@@ -1,282 +1,17 @@
-@article{brunton2016pnas,
-  title = {Discovering governing equations from data by sparse identification of nonlinear dynamical systems},
-  author = {Brunton, Steven L. and Proctor, Joshua L. and Kutz, J. Nathan},
-  journal = {Proceedings of the National Academy of Sciences},
-  volume = {113},
-  number = {15},
-  pages = {3932--3937},
-  year = {2016},
-  publisher = {National Academy of Sciences},
-  doi = {10.1073/pnas.1517384113}
-}
-
-@article{zheng2018ieee,
-  title = {A unified framework for sparse relaxed regularized regression: SR3},
-  author = {Zheng, Peng and Askham, Travis and Brunton, Steven L. and Kutz, J. Nathan and Aravkin, Aleksandr Y.},
-  journal = {IEEE Access},
-  volume = {7},
-  pages = {1404--1423},
-  year = {2018},
-  publisher = {IEEE},
-  doi = {10.1109/access.2018.2886528}
-}
-
-@article{champion2019,
-  title = {A unified sparse optimization framework to learn parsimonious physics-informed models from data},
-  author = {Champion, Kathleen and Zheng, Peng and Aravkin, Aleksandr Y. and Brunton, Steven L. and Kutz, J. Nathan},
-  journal = {arXiv preprint arXiv:1906.10612},
-  year = {2019}
-}
-
-@article {Schmidt81,
-  author = {Schmidt, Michael and Lipson, Hod},
-  title = {Distilling Free-Form Natural Laws from Experimental Data},
-  volume = {324},
-  number = {5923},
-  pages = {81--85},
-  year = {2009},
-  publisher = {American Association for the Advancement of Science},
-  issn = {0036-8075},
-  journal = {Science},
-  doi = {10.1126/science.1165893}
-}
-
-@article{PhysRevMaterials.2.083802,
-  title = {SISSO: A compressed-sensing method for identifying the best low-dimensional descriptor in an immensity of offered candidates},
-  author = {Ouyang, Runhai and Curtarolo, Stefano and Ahmetcik, Emre and Scheffler, Matthias and Ghiringhelli, Luca M.},
-  journal = {Physical Review Materials},
-  volume = {2},
-  issue = {8},
-  pages = {083802},
-  numpages = {11},
-  year = {2018},
-  publisher = {American Physical Society},
-  doi = {10.1103/physrevmaterials.2.083802}
-}
-
-@article{10.2307/2346178,
- ISSN = {00359246},
- author = {Robert Tibshirani},
- journal = {Journal of the Royal Statistical Society. Series B (Methodological)},
- number = {1},
- pages = {267--288},
- publisher = {Royal Statistical Society, Wiley},
- title = {Regression Shrinkage and Selection via the Lasso},
- volume = {58},
- year = {1996},
- doi = {10.1111/j.2517-6161.1996.tb02080.x}
-}
-
-@misc{markus_quade_sparsereg,
-  author       = {Markus Quade},
-  title        = {sparsereg - collection of modern sparse regression algorithms},
-  month        = feb,
-  year         = 2018,
-  doi          = {10.5281/zenodo.1173754},
-  url          = {https://github.com/ohjeah/sparsereg}
-}
-
-@article{Sorokina2016oe,
-  Author = {Sorokina, Mariia and Sygletos, Stylianos and Turitsyn, Sergei},
-  Journal = {Optics express},
-  Number = {26},
-  Pages = {30433--30443},
-  Publisher = {Optical Society of America},
-  Title = {Sparse identification for nonlinear optical communication systems: {SINO} method},
-  Volume = {24},
-  Year = {2016},
-  doi = {10.1364/oe.24.030433}
-}
-
-@article{Hoffmann2018,
-  Author = {Hoffmann, Moritz and Fr{\"o}hner, Christoph and No{\'e}, Frank},
-  Journal = {Journal of Chemical Physics},
-  Number = {025101},
-  Title = {Reactive {SINDy}: Discovering governing reactions from concentration data},
-  Volume = {150},
-  Year = {2019},
-  doi = {10.1063/1.5066099}
-}
-
-@article{Dam2017pf,
-  Author = {Dam, Magnus and Br{\o}ns, Morten and Juul Rasmussen, Jens and Naulin, Volker and Hesthaven, Jan S.},
-  Journal = {Physics of Plasmas},
-  Number = {2},
-  Pages = {022310},
-  Publisher = {AIP Publishing},
-  Title = {Sparse identification of a predator-prey system from simulation data of a convection model},
-  Volume = {24},
-  Year = {2017},
-  doi = {10.1063/1.4977057}
-}
-
-@article{lai2019sparse,
-  Author = {Lai, Zhilu and Nagarajaiah, Satish},
-  Journal = {Mechanical Systems and Signal Processing},
-  Pages = {813--842},
-  Publisher = {Elsevier},
-  Title = {Sparse structural system identification method for nonlinear dynamic systems with hysteresis/inelastic behavior},
-  Volume = {117},
-  Year = {2019},
-  doi = {10.1016/j.ymssp.2018.08.033}
-}
-
-@article{Rudy2017sciadv,
-  Author = {Rudy, Samuel H and Brunton, Steven L. and Proctor, Joshua L. and Kutz, J. Nathan},
-  Journal = {Science Advances},
-  Number = {e1602614},
-  Title = {Data-driven discovery of partial differential equations},
-  Volume = {3},
-  Year = {2017},
-  doi = {10.1126/sciadv.1602614}
-}
-
-@inproceedings{Schaeffer2017prsa,
-  Author = {Schaeffer, Hayden},
-  Booktitle = {Proceedings of the Royal Society A},
-  Number = {2197},
-  Organization = {The Royal Society},
-  Pages = {20160446},
-  Title = {Learning partial differential equations via data discovery and sparse optimization},
-  Volume = {473},
-  Year = {2017},
-  doi = {10.1098/rspa.2016.0446}
-}
-
-@article{tran2017exact,
-  title = {Exact recovery of chaotic systems from highly corrupted data},
-  author = {Tran, Giang and Ward, Rachel},
-  journal = {Multiscale Modeling \& Simulation},
-  volume = {15},
-  number = {3},
-  pages = {1108--1129},
-  year = {2017},
-  publisher = {SIAM},
-  doi = {10.1137/16m1086637}
-}
-
-@article{schaeffer2018extracting,
-  Author = {Schaeffer, Hayden and Tran, Giang and Ward, Rachel},
-  Journal = {SIAM Journal on Applied Mathematics},
-  Number = {6},
-  Pages = {3279--3295},
-  Publisher = {SIAM},
-  Title = {Extracting sparse high-dimensional dynamics from limited data},
-  Volume = {78},
-  Year = {2018},
-  doi = {10.1137/18m116798x}
-}
-
-@article{Loiseau2017jfm,
-  Author = {Loiseau, J.-C. and Brunton, Steven L.},
-  Journal = {Journal of Fluid Mechanics},
-  Pages = {42-67},
-  Title = {Constrained Sparse {Galerkin} Regression},
-  Volume = {838},
-  Year = {2018},
-  doi = {10.1017/jfm.2017.823}
-}
-
-@article{boninsegna2018sparse,
-  title = {Sparse learning of stochastic dynamical equations},
-  author = {Boninsegna, Lorenzo and N{\"u}ske, Feliks and Clementi, Cecilia},
-  journal = {The Journal of chemical physics},
-  volume = {148},
-  number = {24},
-  pages = {241723},
-  year = {2018},
-  publisher = {AIP Publishing LLC},
-  doi = {10.1063/1.5018409}
-}
-
-@article{brunton2016SINDYc,
-  title = {Sparse identification of nonlinear dynamics with control (SINDYc)},
-  author = {Brunton, Steven L. and Proctor, Joshua L. and Kutz, J. Nathan},
-  journal = {IFAC-PapersOnLine},
-  volume = {49},
-  number = {18},
-  pages = {710--715},
-  year = {2016},
-  publisher = {Elsevier},
-  doi = {10.1016/j.ifacol.2016.10.249}
-}
-
-@article{Schaeffer2017pre,
-  Author = {Schaeffer, Hayden and McCalla, Scott G},
-  Journal = {Physical Review E},
-  Number = {2},
-  Pages = {023302},
-  Publisher = {APS},
-  Title = {Sparse model selection via integral terms},
-  Volume = {96},
-  Year = {2017},
-  doi = {10.1103/physreve.96.023302}
-}
-
-@article{Raissi2019jcp,
-  Author = {Raissi, M and Perdikaris, P and Karniadakis, GE},
-  Journal = {Journal of Computational Physics},
-  Pages = {686--707},
-  Publisher = {Elsevier},
-  Title = {Physics-informed neural networks: A deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations},
-  Volume = {378},
-  Year = {2019},
-  doi = {10.1016/j.jcp.2018.10.045}
-}
-
-@article{Kaiser2018prsa,
-  Author = {Kaiser, Eurika and Kutz, J Nathan and Brunton, Steven L},
-  Journal = {Proceedings of the Royal Society of London A},
-  Number = {2219},
-  Title = {Sparse identification of nonlinear dynamics for model predictive control in the low-data limit},
-  Volume = {474},
-  Year = {2018},
-  doi = {10.1098/rspa.2018.0335}
-}
-
-@article{Thaler2019jcp,
-  Author = {Thaler, Stephan and Paehler, Ludger and Adams, Nikolaus A},
-  Journal = {Journal of Computational Physics},
-  Pages = {108851},
-  Publisher = {Elsevier},
-  Title = {Sparse identification of truncation errors},
-  Volume = {397},
-  Year = {2019},
-  doi = {10.1016/j.jcp.2019.07.049}
-}
-
-@article{Loiseau2019data,
-  Author = {Loiseau, Jean-Christophe},
-  Journal = {arXiv preprint arXiv:1911.07920},
-  Title = {Data-driven modeling of the chaotic thermal convection in an annular thermosyphon},
-  Year = {2019}
-}
-
-@article{Reinbold2020pre,
-  Author = {Reinbold, Patrick AK and Gurevich, Daniel R and Grigoriev, Roman O},
-  Journal = {Physical Review E},
-  Number = {1},
-  Pages = {010203},
-  Publisher = {APS},
-  Title = {Using noisy or incomplete data to discover models of spatiotemporal dynamics},
-  Volume = {101},
-  Year = {2020},
-  doi = {10.1103/physreve.101.010203}
-}
+PySensors-specific citations
 
-@article{Gelss2019mindy,
-  Author = {Gel{\ss}, Patrick and Klus, Stefan and Eisert, Jens and Sch{\"u}tte, Christof},
-  Journal = {Journal of Computational and Nonlinear Dynamics},
-  Number = {6},
-  Publisher = {American Society of Mechanical Engineers Digital Collection},
-  Title = {Multidimensional approximation of nonlinear dynamical systems},
-  Volume = {14},
-  Year = {2019},
-  doi = {10.1115/1.4043148}
+@article{clark2018greedy,
+  title={Greedy sensor placement with cost constraints},
+  author={Clark, Emily and Askham, Travis and Brunton, Steven L and Kutz, J Nathan},
+  journal={IEEE Sensors Journal},
+  volume={19},
+  number={7},
+  pages={2642--2656},
+  year={2018},
+  publisher={IEEE}
 }
 
-PySensors-specific citations
-@article{manohar2018sparse,
+@article{manohar2018data,
   title={Data-driven sparse sensor placement for reconstruction: Demonstrating the benefits of exploiting known patterns},
   author={Manohar, Krithika and Brunton, Bingni W and Kutz, J Nathan and Brunton, Steven L},
   journal={IEEE Control Systems Magazine},
@@ -287,18 +22,7 @@ @article{manohar2018sparse
   publisher={IEEE}
 }
 
-@article{clark2018cost,
-  title={Greedy sensor placement with cost constraints},
-  author={Clark, Emily and Askham, Travis and Brunton, Steven L and Kutz, J Nathan},
-  journal={IEEE Sensors Journal},
-  volume={19},
-  number={7},
-  pages={2642--2656},
-  year={2018},
-  publisher={IEEE}
-}
-
-@article{brunton2016sspoc,
+@article{brunton2016sparse,
   title={Sparse sensor placement optimization for classification},
   author={Brunton, Bingni W and Brunton, Steven L and Proctor, Joshua L and Kutz, J Nathan},
   journal={SIAM Journal on Applied Mathematics},
@@ -309,3 +33,55 @@ @article{brunton2016sspoc
   publisher={SIAM}
 }
 
+@article{summers2015submodularity,
+  title={On submodularity and controllability in complex dynamical networks},
+  author={Summers, Tyler H and Cortesi, Fabrizio L and Lygeros, John},
+  journal={IEEE Transactions on Control of Network Systems},
+  volume={3},
+  number={1},
+  pages={91--101},
+  year={2015},
+  publisher={IEEE}
+}
+
+@article{chen2011h,
+  title={H 2 optimal actuator and sensor placement in the linearised complex Ginzburg-Landau system},
+  author={Chen, Kevin K and Rowley, Clarence W},
+  journal={Journal of Fluid Mechanics},
+  volume={681},
+  number={241-260},
+  year={2011},
+  publisher={Cambridge University Press, The Edinburgh Building, Cambridge CB 2 2 RU~…}
+}
+
+@article{krause2008near,
+  title={Near-optimal sensor placements in Gaussian processes: Theory, efficient algorithms and empirical studies},
+  author={Krause, Andreas and Singh, Ajit and Guestrin, Carlos},
+  journal={Journal of Machine Learning Research},
+  volume={9},
+  number={Feb},
+  pages={235--284},
+  year={2008}
+}
+
+@article{joshi2008sensor,
+  title={Sensor selection via convex optimization},
+  author={Joshi, Siddharth and Boyd, Stephen},
+  journal={IEEE Transactions on Signal Processing},
+  volume={57},
+  number={2},
+  pages={451--462},
+  year={2008},
+  publisher={IEEE}
+}
+
+@article{willcox2006unsteady,
+  title={Unsteady flow sensing and estimation via the gappy proper orthogonal decomposition},
+  author={Willcox, Karen},
+  journal={Computers \& fluids},
+  volume={35},
+  number={2},
+  pages={208--226},
+  year={2006},
+  publisher={Elsevier}
+}