✨ Add positional arguments, verbose mode, and overwrite protection #34

	name: CI

	on:
	workflow_dispatch:
	push:
	branches: [ main ]
	paths-ignore:
	- "*.md"
	- "*.png"
	- "*.svg"
	- "docs/**"
	- ".vscode/**"
	pull_request:
	branches: [ main ]
	paths-ignore:
	- "*.md"
	- "*.png"
	- "*.svg"
	- "docs/**"
	- ".vscode/**"

	jobs:
	build-and-test:
	name: ${{ matrix.config.name }}
	runs-on: ${{ matrix.config.os }}
	strategy:
	fail-fast: false
	matrix:
	config:
	- {
	name: "ubuntu-22.04 - Python 3.11",
	os: ubuntu-22.04,
	python-version: "3.11"
	}
	- {
	name: "ubuntu-22.04 - Python 3.12",
	os: ubuntu-22.04,
	python-version: "3.12"
	}
	- {
	name: "ubuntu-22.04 - Python 3.13",
	os: ubuntu-22.04,
	python-version: "3.13"
	}

	steps:
	- name: Checkout
	uses: actions/checkout@v4
	with:
	path: src_dir
	- name: Setup python ${{ matrix.config.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.config.python-version }}
	cache: 'pip'
	- name: Install package
	run: \|
	python -m pip install --upgrade pip
	pip install -e src_dir[dev]
	- name: Lint with ruff
	working-directory: src_dir
	run: \|
	ruff check .
	ruff format --check .
	- name: Type check with mypy
	working-directory: src_dir
	run: mypy src/sitk_cli
	- name: Test with pytest
	working-directory: src_dir
	run: pytest tests --cov --cov-report=xml
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	if: matrix.config.python-version == '3.11'
	with:
	file: src_dir/coverage.xml
	fail_ci_if_error: false

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