environment updates

Author: scottyhq

.binder/book_linux-64_conda_spec.txt

@@ -3,23 +3,34 @@ channels:
 - conda-forge
 - nodefaults
 dependencies:
-- jupyter-book >=1,<2
 - codespell >=2.4.1,<3
-- cf_xarray >=0.10.0,<0.11
+- jupyter-book >=1,<2
+- nb-clean >=4.0.1,<5
+- papermill >=2.5.0,<3
+- pre-commit >=4.2.0,<5
+- aiohttp >=3.11.13,<4
+- distributed <2024.12.0
+- cf_xarray >=0.10.4,<0.11
 - contextily >=1.6.2,<2
+- flox >=0.10.1,<0.11
 - geopandas >=1.0.1,<2
+- geoviews-core >=1.14.0,<2
 - hvplot >=0.11.2,<0.12
+- ipykernel >=6.29.5,<7
 - jupyterlab >=4.3.5,<5
+- jupyterlab-myst >=2.4.2,<3
 - matplotlib-base >=3.10.0,<4
 - numpy >=2.2.3,<3
 - pandas >=2.2.3,<3
 - planetary-computer >=1.0.0,<2
+- pyarrow >=19.0.1,<20
 - pystac >=1.12.1,<2
 - pystac-client >=0.8.6,<0.9
 - requests >=2.32.3,<3
+- rich >=13.9.4,<14
 - rioxarray >=0.18.2,<0.19
 - scipy >=1.15.2,<2
 - stackstac >=0.5.1,<0.6
-- xarray >=2025.1.2,<2026
+- xarray >=2025.3.0,<2026
+- xvec >=0.3.1,<0.4
 - zarr <3
-- jupyterlab-myst >=2.4.2,<3

.binder/default_linux-64_conda_spec.txt

@@ -10,9 +10,7 @@ package.json
 utils/get_links.py
 
 #Data 
-sentinel1/data/raster_data/*
-itslive/data/raster_data/*
-#itslive/data/raster_data/single_glacier_itslive.zarr/*
+**/data/raster_data/*
 
 #Extra nbs
 sentinel1/subste_nbs

.binder/environment.yml

@@ -12,7 +12,7 @@ repos:
     rev: 1.9.1  # Check latest version
     hooks:
       - id: nbqa-flake8
-        args: ["--max-line-length=88","--ignore=E402"] #ignore module import not at top of file  
+        args: ["--max-line-length=120","--ignore=E402"] #ignore module import not at top of file  
         files: "\\.ipynb$" 
       - id: nbqa-black
         args: ["--line-length=120"]

.gitignore

@@ -16,6 +16,9 @@ execute:
   execute_notebooks:  cache #'auto'
   allow_errors: true
   timeout: 1500
+  exclude_patterns:
+  # Can't control execution order in jb build, so be sure to download from zenodo first
+    - 'download_zenodo*'
 
 
 # Define the name of the latex output file for PDF builds

.pre-commit-config.yaml

@@ -14,12 +14,15 @@ sentinel1 = "jupyter lab --LabApp.default_url='/lab/tree/book/sentinel1/nbs/1_re
 
 [dependencies]
 aiohttp = ">=3.11.13,<4"
-distributed = ">=2025.2.0,<2026"
-cf_xarray = ">=0.10.0,<0.11"
+# https://github.com/dask/dask/issues/11853
+distributed = "<2024.12.0"
+cf_xarray = ">=0.10.4,<0.11"
 contextily = ">=1.6.2,<2"
+flox = ">=0.10.1,<0.11"
 geopandas = ">=1.0.1,<2"
 geoviews-core = ">=1.14.0,<2"
 hvplot = ">=0.11.2,<0.12"
+ipykernel = ">=6.29.5,<7"
 jupyterlab = ">=4.3.5,<5"
 jupyterlab-myst = ">=2.4.2,<3"
 matplotlib-base = ">=3.10.0,<4"
@@ -34,22 +37,25 @@ rich = ">=13.9.4,<14"
 rioxarray = ">=0.18.2,<0.19"
 scipy = ">=1.15.2,<2"
 stackstac = ">=0.5.1,<0.6"
-xarray = ">=2025.1.2,<2026"
+xarray = ">=2025.3.0,<2026"
 xvec = ">=0.3.1,<0.4"
 zarr = "<3"
-nb-clean = ">=4.0.1,<5"
-papermill = ">=2.5.0,<3"
-ipykernel = ">=6.29.5,<7"
 
 [feature.book.dependencies]
-jupyter-book = ">=1,<2"
 codespell = ">=2.4.1,<3"
+jupyter-book = ">=1,<2"
+nb-clean = ">=4.0.1,<5"
+papermill = ">=2.5.0,<3"
+pre-commit = ">=4.2.0,<5"
 
 [feature.book.tasks]
 build = "jupyter-book build book"
 check-links = "jupyter-book build book --builder linkcheck"
+precommit = "pre-commit run --all"
 # Unfortunately not an easy way to check .ipynb files currently
 # https://github.com/codespell-project/codespell/issues/2138
-spellcheck = "codespell --skip='pixi.lock,paper.bib,_build,*.ipynb'"
-spellcheck-nb = "jupyter nbconvert book/endmatter/*.ipynb book/s1_nbs/*.ipynb book/itslive_nbs/*.ipynb  --NbConvertApp.use_output_suffix=False --NbConvertApp.export_format=notebook --FilesWriter.build_directory=/tmp/book --ClearOutputPreprocessor.enabled=True ; codespell /tmp/book"
+spellcheck = "codespell --skip='.tif.xml,pixi.lock,paper.bib,_build,*.ipynb'"
+spellcheck-nb = "jupyter nbconvert book/**/nbs/*.ipynb --NbConvertApp.use_output_suffix=False --NbConvertApp.export_format=notebook --FilesWriter.build_directory=/tmp/book --ClearOutputPreprocessor.enabled=True ; codespell /tmp/book"
+# NOTE: these are platform specific, just doing linux-64 for BinderHub
 export-conda-env = "pixi project export conda-environment -p linux-64 .binder/environment.yml"
+export-conda-explicit = "pixi project export conda-explicit-spec -p linux-64 .binder"