volara-ml/.github/workflows/tests.yaml at main · e11bio/volara-ml · GitHub

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name: Test

on:
  push:

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12"]
        resolution: ["highest", "lowest-direct"]

    services:
      postgres:
        image: postgres
        env:
          POSTGRES_HOST_AUTH_METHOD: trust
        ports:
          - 5432:5432
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    env:
       PGUSER: postgres

    steps:
    - uses: actions/checkout@v2

    - name: Set up uv
      # Install a specific uv version using the installer
      run: curl -LsSf https://astral.sh/uv/0.4.1/install.sh | sh

    - name: Test with pytest
      run: |
        uv sync --extra dev --extra torch --extra jax --resolution ${{ matrix.resolution }} --python ${{ matrix.python-version}}
        uv run pytest --cov=src tests

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v2
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        fail_ci_if_error: false