fix test and mypy action

Author: pattonw

.github/workflows/tests.yaml

@@ -36,7 +36,9 @@ jobs:
       run: curl -LsSf https://astral.sh/uv/0.4.1/install.sh | sh
 
     - name: Test with pytest
-      run: uv run --with . --extra dev --resolution ${{ matrix.resolution }} --pre --python ${{ matrix.python-version}} pytest --cov=volara tests
+      run: |
+        uv pip install .
+        uv run --extra dev --resolution ${{ matrix.resolution }} --pre --python ${{ matrix.python-version}} pytest --cov=volara tests
 
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v2

pyproject.toml

@@ -7,6 +7,11 @@ requires-python = ">=3.11"
 dependencies = [
     "volara",
     "torch>=2.4",
+    "daisy>=1.2.2",
+    "gunpowder>=1.4.0",
+    "funlib.geometry>=0.3",
+    "funlib.persistence>=0.6",
+    "pydantic>=2.6.3",
 ]
 
 [project.optional-dependencies]
@@ -34,4 +39,11 @@ predict = "volara_torch.blockwise.predict:Predict"
 volara = { git = "https://github.com/e11bio/volara" }
 
 [tool.ruff]
-lint.select = ["F", "W", "I001"]
+lint.select = ["F", "W", "I001"]
+
+[[tool.mypy.overrides]]
+module = [
+    "daisy.*",
+    "gunpowder.*",
+]
+ignore_missing_imports = true