Merge pull request #19 from e11bio/macos-intel-woes

Fix transitive llvmlite dependency on MacOS x86_64

Author: pattonw

.github/workflows/tests.yaml

@@ -4,7 +4,7 @@ on:
   push:
 
 jobs:
-  test:
+  test-linux:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
@@ -29,17 +29,34 @@ jobs:
        PGUSER: postgres
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
 
     - name: Set up uv
-      # Install a specific uv version using the installer
-      run: curl -LsSf https://astral.sh/uv/0.4.1/install.sh | sh
+      uses: astral-sh/setup-uv@v5
 
     - name: Test with pytest
-      run: uv run --extra dev --extra indirect --resolution ${{ matrix.resolution }} --python ${{ matrix.python-version}} pytest --cov=volara tests
+      run: uv run --extra dev --extra indirect --resolution ${{ matrix.resolution }} --python ${{ matrix.python-version }} pytest --cov=volara tests
 
     - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v2
+      uses: codecov/codecov-action@v4
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
-        fail_ci_if_error: false
+        fail_ci_if_error: false
+
+  test-macos:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [macos-latest, macos-15-intel]
+        python-version: ["3.12"]
+        resolution: ["highest"]
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v5
+
+    - name: Test with pytest
+      run: uv run --extra dev --extra indirect --resolution ${{ matrix.resolution }} --python ${{ matrix.python-version }} pytest --cov=volara tests

pyproject.toml

@@ -25,6 +25,8 @@ dependencies = [
     "mwatershed>=0.5.2",
     "pydantic>=2.6.3",
     "numba>=0.59.0",
+    # llvmlite (numba dep) dropped macOS x86_64 wheels after 0.45; avoid source builds
+    "llvmlite<0.46,!=0.44.*; platform_machine == 'x86_64' and sys_platform == 'darwin'",
     "scipy>=1.15.3",
     "scikit-image>=0.25.2",
     "cloud-volume>=12.4.1",