Add CLI support #3
Description
Add cli support
We already have all of our tasks configured via basic json compatible arguments (float, str, tuple, etc.), it should be straight forward to expose each blockwise call to a cli so:
from volara.blockwise import ExtractFragments
extract_fragments = ExtractFrags(
db=db,
affs_data=affinities,
frags_data=fragments,
block_size=(20, 100, 100),
context=(2, 2, 2),
bias=[-0.5, -0.5, -0.5],
)
extract_fragments.run_blockwise()becomes
volara extract_frags --db db.sqlite --affs_data path/to/affs --frags_data path/to/frags --blocksize 20 100 100 --context 2 2 2 --bias -0.5 -0.5 -0.5