Merge pull request #3988 from easybuilders/4.5.x

release EasyBuild v4.5.4

Author: SebastianAchilles

.github/workflows/bootstrap_script.yml

@@ -107,7 +107,7 @@ jobs:
           EB_BOOTSTRAP_VERSION=$(grep '^EB_BOOTSTRAP_VERSION' easybuild/scripts/bootstrap_eb.py | sed 's/[^0-9.]//g')
           EB_BOOTSTRAP_SHA256SUM=$(sha256sum easybuild/scripts/bootstrap_eb.py | cut -f1 -d' ')
           EB_BOOTSTRAP_FOUND="$EB_BOOTSTRAP_VERSION $EB_BOOTSTRAP_SHA256SUM"
-          EB_BOOTSTRAP_EXPECTED="20210715.01 784dd29063d941be2d8b70e4c2eec12a9afe360f3ef8f753dcb518abf43ca7de"
+          EB_BOOTSTRAP_EXPECTED="20210715.01 0ffdc17ed7eacf78369c9cd6743728f36e61bb8bf5c1bdc1e23cf2040b1ce301"
           test "$EB_BOOTSTRAP_FOUND" = "$EB_BOOTSTRAP_EXPECTED" || (echo "Version check on bootstrap script failed $EB_BOOTSTRAP_FOUND" && exit 1)
 
           # test bootstrap script

.github/workflows/container_tests.yml

@@ -20,6 +20,8 @@ jobs:
 
     - name: install OS & Python packages
       run: |
+        # ensure package list is up to date to avoid 404's for old packages
+        sudo apt-get update -yqq
         # for building Singularity images
         sudo apt-get install rpm
         sudo apt-get install yum

.github/workflows/linting.yml

@@ -3,13 +3,17 @@ on: [push, pull_request]
 jobs:
   python-linting:
     runs-on: ubuntu-18.04
+    strategy:
+      matrix:
+        python-version: [2.7, 3.5, 3.6, 3.7, 3.8, 3.9, '3.10']
+        
     steps:
     - uses: actions/checkout@v2
 
     - name: set up Python
       uses: actions/setup-python@v2
       with:
-        python-version: 3.8
+        python-version: ${{ matrix.python-version }}
 
     - name: install Python packages
       run: |
@@ -18,4 +22,10 @@ jobs:
 
     - name: Run flake8 to verify PEP8-compliance of Python code
       run: |
-        flake8
+        # don't check py2vs3/py3.py when testing with Python 2, and vice versa
+        if [[ "${{ matrix.python-version }}" =~ "2." ]]; then
+            py_excl=py3
+        else
+            py_excl=py2
+        fi
+        flake8 --exclude ./easybuild/tools/py2vs3/${py_excl}.py

RELEASE_NOTES

@@ -4,6 +4,29 @@ For more detailed information, please see the git log.
 These release notes can also be consulted at https://easybuild.readthedocs.io/en/latest/Release_notes.html.
 
 
+v4.5.4 (March 31st 2022)
+------------------------
+
+update/bugfix release
+
+- various enhancements, including:
+  - warn about potentially missing patches in --new-pr (#3759, #3966)
+  - add support for 'clone_into' field in git_config source spec to specify different name for top-level directory (#3949)
+  - add bash completion for easyconfigs from local dir but not robot search path (#3953)
+  - add a 'sync pr' message when the PR has a mergeable state but is showing a failed status for the test suite on the last commit (#3967)
+  - add gmpit toolchain definition (GCC + MPItrampoline) (#3971)
+  - use 'zypper search -i' to check whether specified OS dependency is installed on openSUSE + make sure that rpm is considered for checking OS dependencies on RHEL8 (#3973)
+  - add support for post-install patches (#3974)
+  - add support for 'download_instructions' easyconfig parameter key to specify some download or installation steps for user in case of complicated way of obtaining needed files (#3976, #3981)
+  - also try collecting AMD GPU info (via rocm-smi) for --show-system-info (#3978, #3982)
+- various bug fixes, including:
+  - ensure --review-pr can find dependencies included in PR (#3979)
+  - run 'apt-get update' in GitHub Actions workflow for container tests to update container package list before installing anything (#3985)
+- other changes:
+  - enable code linting check for all supported Python versions (#3725)
+  - update copyright lines for 2022 (#3986)
+
+
 v4.5.3 (February 11th 2022)
 ---------------------------
 

easybuild/__init__.py

@@ -1,5 +1,5 @@
 ##
-# Copyright 2011-2021 Ghent University
+# Copyright 2011-2022 Ghent University
 #
 # This file is part of EasyBuild,
 # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),

easybuild/base/exceptions.py

@@ -1,5 +1,5 @@
 #
-# Copyright 2015-2021 Ghent University
+# Copyright 2015-2022 Ghent University
 #
 # This file is part of EasyBuild,
 # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),

easybuild/base/fancylogger.py

@@ -1,5 +1,5 @@
 #
-# Copyright 2011-2021 Ghent University
+# Copyright 2011-2022 Ghent University
 #
 # This file is part of EasyBuild,
 # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),

easybuild/base/generaloption.py

@@ -1,5 +1,5 @@
 #
-# Copyright 2011-2021 Ghent University
+# Copyright 2011-2022 Ghent University
 #
 # This file is part of EasyBuild,
 # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),

easybuild/base/testing.py

@@ -1,5 +1,5 @@
 #
-# Copyright 2014-2021 Ghent University
+# Copyright 2014-2022 Ghent University
 #
 # This file is part of EasyBuild,
 # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),

easybuild/framework/__init__.py

@@ -1,5 +1,5 @@
 ##
-# Copyright 2009-2021 Ghent University
+# Copyright 2009-2022 Ghent University
 #
 # This file is part of EasyBuild,
 # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),