Merge branch 'develop' into 5.0.x

Author: boegel

.github/workflows/end2end.yml

@@ -17,10 +17,17 @@ jobs:
       fail-fast: false
     container:
       image: ghcr.io/easybuilders/${{ matrix.container }}-amd64
-    env: {ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION: true} # Allow using Node16 actions
+      volumes:
+        - /node20217:/node20217:rw,rshared
+        - ${{ matrix.container == 'centos-7.9' && '/node20217:/__e/node20:ro,rshared' || ' ' }}
     steps:
+      - name: install nodejs20glibc2.17
+        if: ${{ matrix.container == 'centos-7.9' }}
+        run: |
+          curl -LO https://unofficial-builds.nodejs.org/download/release/v20.9.0/node-v20.9.0-linux-x64-glibc-217.tar.xz
+          tar -xf node-v20.9.0-linux-x64-glibc-217.tar.xz --strip-components 1 -C /node20217
       - name: Check out the repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: download and unpack easyblocks and easyconfigs repositories
         run: |

.github/workflows/unit_tests.yml

@@ -197,7 +197,7 @@ jobs:
             IGNORE_PATTERNS+="|skipping SvnRepository test"
             IGNORE_PATTERNS+="|requires Lmod as modules tool"
             IGNORE_PATTERNS+="|stty: 'standard input': Inappropriate ioctl for device"
-            IGNORE_PATTERNS+="|CryptographyDeprecationWarning: Python 3.[56]"
+            IGNORE_PATTERNS+="|CryptographyDeprecationWarning: Python 3.[567]"
             IGNORE_PATTERNS+="|from cryptography.* import "
             IGNORE_PATTERNS+="|CryptographyDeprecationWarning: Python 2"
             IGNORE_PATTERNS+="|Blowfish"

easybuild/framework/easyblock.py

@@ -40,6 +40,7 @@
 * Maxime Boissonneault (Compute Canada)
 * Davide Vanzo (Vanderbilt University)
 * Caspar van Leeuwen (SURF)
+* Jan Andre Reuter (Juelich Supercomputing Centre)
 """
 import concurrent
 import copy
@@ -143,10 +144,11 @@ def extra_options(extra=None):
     #
     # INIT
     #
-    def __init__(self, ec):
+    def __init__(self, ec, logfile=None):
         """
         Initialize the EasyBlock instance.
         :param ec: a parsed easyconfig file (EasyConfig instance)
+        :param logfile: pass logfile from other EasyBlock. If not passed, create logfile (optional)
         """
 
         # keep track of original working directory, so we can go back there
@@ -216,7 +218,8 @@ def __init__(self, ec):
 
         # logging
         self.log = None
-        self.logfile = None
+        self.logfile = logfile
+        self.external_logfile = logfile is not None
         self.logdebug = build_option('debug')
         self.postmsg = ''  # allow a post message to be set, which can be shown as last output
         self.current_step = None
@@ -305,11 +308,11 @@ def _init_log(self):
         if self.log is not None:
             return
 
-        self.logfile = get_log_filename(self.name, self.version, add_salt=True)
-        fancylogger.logToFile(self.logfile, max_bytes=0)
+        if self.logfile is None:
+            self.logfile = get_log_filename(self.name, self.version, add_salt=True)
+            fancylogger.logToFile(self.logfile, max_bytes=0)
 
         self.log = fancylogger.getLogger(name=self.__class__.__name__, fname=False)
-
         self.log.info(this_is_easybuild())
 
         this_module = inspect.getmodule(self)
@@ -325,6 +328,9 @@ def close_log(self):
         """
         Shutdown the logger.
         """
+        # only close log if we created a logfile
+        if self.external_logfile:
+            return
         self.log.info("Closing log for application name %s version %s" % (self.name, self.version))
         fancylogger.logToFile(self.logfile, enable=False)
 

easybuild/scripts/findUpdatedEcs.sh

@@ -8,7 +8,7 @@ YELLOW='\033[0;33m'
 NC='\033[0m'
 
 function printError {
-    echo -e "${RED}$@${NC}"
+    echo -e "${RED}$*${NC}"
 }
 
 verbose=0
@@ -23,11 +23,11 @@ function checkModule {
     moduleStr="$moduleName/$moduleVersion"
     printVerbose "Processing $moduleStr"
     ec_glob=( "$moduleFolder/easybuild/"*.eb )
-    if [[ ! -e "${ec_glob[@]}" ]]; then
+    if [[ ! -e "${ec_glob[0]}" ]]; then
         printError "=== Did not find installed EC for $moduleStr"
         return
     fi
-    ec_installed="$ec_glob"
+    ec_installed="${ec_glob[0]}"
     ec_filename=$(basename "$ec_installed")
     # Try with most likely location first for speed
     first_letter=${ec_filename:0:1}
@@ -67,15 +67,15 @@ if path=$(which eb 2>/dev/null); then
 fi
 
 function usage {
-    echo "Usage: $(basename "$0") [--verbose] [--diff] --loaded|--modules INSTALLPATH --easyconfigs EC-FOLDER"
+    echo "Usage: $(basename "$0") [--verbose] [--short] [--diff] --loaded|--modules INSTALLPATH --easyconfigs EC-FOLDER"
     echo
     echo "Check installed modules against the source EasyConfig (EC) files to determine which have changed."
     echo "Can either check the currently loaded modules or all modules installed in a specific location"
     echo
     echo "--verbose                Verbose status output while checking"
-    echo "--loaded                 Check only currently loaded modules"
     echo "--short                  Only show filename of changed ECs"
     echo "--diff                   Show diff of changed module files"
+    echo "--loaded                 Check only currently loaded modules"
     echo "--modules INSTALLPATH    Check all modules in the specified (software) installpath, i.e. the root of module-binaries"
     echo "--easyconfigs EC-FOLDER  Path to the folder containg the current/updated EasyConfigs. ${ecDefaultFolder:+Defaults to $ecDefaultFolder}"
     exit 0
@@ -115,6 +115,7 @@ done
 if [ -z "$easyconfigFolder" ]; then
     printError "Folder to easyconfigs not given!" && exit 1
 fi
+
 if [ -z "$modulesFolder" ]; then
     if (( checkLoadedModules == 0 )); then
         printError "Need either --modules or --loaded to specify what to check!" && exit 1
@@ -123,13 +124,18 @@ elif (( checkLoadedModules == 1 )); then
     printError "Cannot specify --modules and --loaded!" && exit 1
 fi
 
+if (( showDiff == 1 && short == 1 )); then
+    printError "Cannot specify --diff and --short" && exit 1
+fi
+
 if [ -d "$easyconfigFolder/easybuild/easyconfigs" ]; then
     easyconfigFolder="$easyconfigFolder/easybuild/easyconfigs"
 fi
 
 if (( checkLoadedModules == 1 )); then
-    for varname in $(compgen -A variable | grep '^EBROOT'); do
-        checkModule "${!varname}"
+    IFS=$'\n' read -r -d '' -a unique_module_paths <<< "$(for varname in $(compgen -A variable | grep '^EBROOT'); do echo "${!varname}"; done | sort -u )" || true
+    for module in "${unique_module_paths[@]}"; do
+        checkModule "$module"
     done
 else
     for module in "$modulesFolder"/*/*/easybuild; do

test/framework/easyblock.py

@@ -28,6 +28,7 @@
 @author: Jens Timmerman (Ghent University)
 @author: Kenneth Hoste (Ghent University)
 @author: Maxime Boissonneault (Compute Canada)
+@author: Jan Andre Reuter (Juelich Supercomputing Centre)
 """
 import os
 import re
@@ -2994,6 +2995,47 @@ def run_sanity_check_step(sanity_check_paths, enhance_sanity_check):
         run_sanity_check_step({}, False)
         run_sanity_check_step({}, True)
 
+    def test_create_easyblock_without_logfile(self):
+        """
+        Test creating an EasyBlock without a logfile.
+        This represents scenarios found in Bundle and QuantumESPRESSO, where an EasyBlock is
+        created within another EasyBlock.
+        """
+        self.contents = '\n'.join([
+            'easyblock = "ConfigureMake"',
+            'name = "pi"',
+            'version = "3.14"',
+            'homepage = "http://example.com"',
+            'description = "test easyconfig"',
+            'toolchain = SYSTEM',
+        ])
+        self.writeEC()
+        # Ensure that the default case works as expected
+        eb = EasyBlock(EasyConfig(self.eb_file))
+        self.assertNotEqual(eb.log, None)
+        self.assertNotEqual(eb.logfile, None)
+        # Get reference to the actual log instance and ensure that it works
+        # This is NOT eb.log, which represents a separate logger with a separate name.
+        file_log = fancylogger.getLogger(name=None)
+        self.assertNotEqual(getattr(file_log, 'logtofile_%s' % eb.logfile), False)
+
+        # Now, create another EasyBlock by passing logfile from first EasyBlock.
+        eb_external_logfile = EasyBlock(EasyConfig(self.eb_file), logfile=eb.logfile)
+        self.assertNotEqual(eb_external_logfile.log, None)
+        self.assertTrue(eb_external_logfile.external_logfile)
+        self.assertEqual(eb_external_logfile.logfile, eb.logfile)
+        # Try to log something in it.
+        eb_external_logfile.log.info("Test message")
+
+        # Try to close EasyBlock with external logfile. This should not affect the logger.
+        eb_external_logfile.close_log()
+        self.assertNotEqual(getattr(file_log, 'logtofile_%s' % eb.logfile), False)
+        # Then close the log from creating EasyBlock. This should work as expected.
+        eb.close_log()
+        self.assertEqual(getattr(file_log, 'logtofile_%s' % eb.logfile), False)
+
+        os.remove(eb.logfile)
+
 
 def suite():
     """ return all the tests in this file """