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‎tests/testthat/_snaps/brms.md‎

Lines changed: 14 additions & 14 deletions
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Output
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# Fixed Effects
77
8-
Parameter | Median | 95% CI | pd | Rhat | ESS
9-
----------------------------------------------------------------------
10-
(Intercept) | -0.25 | [-1.28, 0.75] | 68.62% | 0.999 | 3459.00
11-
var_binom1 | -0.64 | [-2.09, 0.64] | 83.20% | 1.000 | 2820.00
12-
groupsb | -0.22 | [-1.35, 0.87] | 64.75% | 1.000 | 3332.00
13-
var_cont | -0.06 | [-0.14, 0.00] | 96.65% | 1.000 | 3528.00
14-
var_binom1:groupsb | 0.53 | [-1.70, 2.69] | 69.25% | 1.000 | 2699.00
8+
Parameter | Median | 95% CI | pd | Rhat | ESS
9+
-------------------------------------------------------------------
10+
(Intercept) | -0.25 | [-1.28, 0.75] | 68.62% | 0.999 | 3459
11+
var_binom1 | -0.64 | [-2.09, 0.64] | 83.20% | 1.000 | 2820
12+
groupsb | -0.22 | [-1.35, 0.87] | 64.75% | 1.000 | 3332
13+
var_cont | -0.06 | [-0.14, 0.00] | 96.65% | 1.000 | 3528
14+
var_binom1:groupsb | 0.53 | [-1.70, 2.69] | 69.25% | 1.000 | 2699
1515
Message
1616
1717
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -27,13 +27,13 @@
2727
Output
2828
# Fixed Effects
2929
30-
Parameter | Median | 95% CI | pd | Rhat | ESS
31-
----------------------------------------------------------------------
32-
(Intercept) | 0.78 | [0.28, 2.11] | 68.62% | 0.999 | 3459.00
33-
var_binom1 | 0.53 | [0.12, 1.90] | 83.20% | 1.000 | 2820.00
34-
groupsb | 0.80 | [0.26, 2.38] | 64.75% | 1.000 | 3332.00
35-
var_cont | 0.94 | [0.87, 1.00] | 96.65% | 1.000 | 3528.00
36-
var_binom1:groupsb | 1.69 | [0.18, 14.80] | 69.25% | 1.000 | 2699.00
30+
Parameter | Median | 95% CI | pd | Rhat | ESS
31+
-------------------------------------------------------------------
32+
(Intercept) | 0.78 | [0.28, 2.11] | 68.62% | 0.999 | 3459
33+
var_binom1 | 0.53 | [0.12, 1.90] | 83.20% | 1.000 | 2820
34+
groupsb | 0.80 | [0.26, 2.38] | 64.75% | 1.000 | 3332
35+
var_cont | 0.94 | [0.87, 1.00] | 96.65% | 1.000 | 3528
36+
var_binom1:groupsb | 1.69 | [0.18, 14.80] | 69.25% | 1.000 | 2699
3737
Message
3838
3939
Uncertainty intervals (equal-tailed) computed using a MCMC distribution

‎tests/testthat/_snaps/printing-stan.md‎

Lines changed: 100 additions & 100 deletions
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@@ -5,17 +5,17 @@
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Output
66
# Fixed Effects
77
8-
Parameter | Mean | 95% CI | pd | Rhat | ESS
9-
---------------------------------------------------------------
10-
(Intercept) | 39.68 | [36.12, 43.27] | 100% | 1.000 | 5242.00
11-
wt | -3.21 | [-4.79, -1.65] | 99.95% | 1.000 | 2071.00
12-
cyl | -1.50 | [-2.36, -0.64] | 99.95% | 1.000 | 1951.00
8+
Parameter | Mean | 95% CI | pd | Rhat | ESS
9+
------------------------------------------------------------
10+
(Intercept) | 39.68 | [36.12, 43.27] | 100% | 1.000 | 5242
11+
wt | -3.21 | [-4.79, -1.65] | 99.95% | 1.000 | 2071
12+
cyl | -1.50 | [-2.36, -0.64] | 99.95% | 1.000 | 1951
1313
1414
# Sigma
1515
16-
Parameter | Mean | 95% CI | pd | Rhat | ESS
17-
--------------------------------------------------------
18-
sigma | 2.67 | [2.06, 3.51] | 100% | 1.000 | 2390.00
16+
Parameter | Mean | 95% CI | pd | Rhat | ESS
17+
-----------------------------------------------------
18+
sigma | 2.67 | [2.06, 3.51] | 100% | 1.000 | 2390
1919
Message
2020
2121
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -28,25 +28,25 @@
2828
Output
2929
# Fixed Effects
3030
31-
Parameter | Mean | 95% CI | pd | Rhat | ESS
32-
-----------------------------------------------------------
33-
(Intercept) | 33.55 | [24.17, 40.87] | 100% | 1.091 | 24.00
34-
wt | -4.49 | [-6.95, -1.68] | 100% | 1.192 | 10.00
31+
Parameter | Mean | 95% CI | pd | Rhat | ESS
32+
---------------------------------------------------------
33+
(Intercept) | 33.55 | [24.17, 40.87] | 100% | 1.091 | 24
34+
wt | -4.49 | [-6.95, -1.68] | 100% | 1.192 | 10
3535
3636
# Sigma
3737
38-
Parameter | Mean | 95% CI | pd | Rhat | ESS
39-
-------------------------------------------------------
40-
sigma | 2.56 | [1.95, 3.48] | 100% | 1.015 | 454.00
38+
Parameter | Mean | 95% CI | pd | Rhat | ESS
39+
----------------------------------------------------
40+
sigma | 2.56 | [1.95, 3.48] | 100% | 1.015 | 454
4141
4242
# Random Effects Variances
4343
44-
Parameter | Mean | 95% CI | pd | Rhat | ESS
45-
---------------------------------------------------------------------------
46-
SD (Intercept: cyl) | 3.00 | [ 0.39, 9.19] | 100% | 1.080 | 32.00
47-
SD (Intercept: gear) | 3.88 | [ 0.21, 10.30] | 100% | 1.010 | 424.00
48-
SD (wt: gear) | 1.96 | [ 0.06, 5.06] | 100% | 1.385 | 9.00
49-
Cor (Intercept~wt: gear) | -0.25 | [-0.99, 0.83] | 62.48% | 1.106 | 36.00
44+
Parameter | Mean | 95% CI | pd | Rhat | ESS
45+
------------------------------------------------------------------------
46+
SD (Intercept: cyl) | 3.00 | [ 0.39, 9.19] | 100% | 1.080 | 32
47+
SD (Intercept: gear) | 3.88 | [ 0.21, 10.30] | 100% | 1.010 | 424
48+
SD (wt: gear) | 1.96 | [ 0.06, 5.06] | 100% | 1.385 | 9
49+
Cor (Intercept~wt: gear) | -0.25 | [-0.99, 0.83] | 62.48% | 1.106 | 36
5050
Message
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Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -59,24 +59,24 @@
5959
Output
6060
# Fixed Effects
6161
62-
Parameter | Mean | 95% CI | pd | Rhat | ESS
63-
----------------------------------------------------------------
64-
(Intercept) | 251.32 | [237.00, 265.98] | 100% | 1.001 | 1621.00
65-
Days | 10.44 | [ 6.84, 13.91] | 100% | 1.004 | 1161.00
62+
Parameter | Mean | 95% CI | pd | Rhat | ESS
63+
-------------------------------------------------------------
64+
(Intercept) | 251.32 | [237.00, 265.98] | 100% | 1.001 | 1621
65+
Days | 10.44 | [ 6.84, 13.91] | 100% | 1.004 | 1161
6666
6767
# Sigma
6868
69-
Parameter | Mean | 95% CI | pd | Rhat | ESS
70-
-----------------------------------------------------------
71-
sigma | 25.94 | [23.05, 29.38] | 100% | 1.000 | 3672.00
69+
Parameter | Mean | 95% CI | pd | Rhat | ESS
70+
--------------------------------------------------------
71+
sigma | 25.94 | [23.05, 29.38] | 100% | 1.000 | 3672
7272
7373
# Random Effects Variances
7474
75-
Parameter | Mean | 95% CI | pd | Rhat | ESS
76-
---------------------------------------------------------------------------------
77-
SD (Intercept: Subject) | 26.63 | [15.46, 42.36] | 100% | 1.002 | 1823.00
78-
SD (Days: Subject) | 6.58 | [ 4.12, 10.16] | 100% | 1.000 | 1228.00
79-
Cor (Intercept~Days: Subject) | 0.09 | [-0.47, 0.67] | 60.42% | 1.003 | 899.00
75+
Parameter | Mean | 95% CI | pd | Rhat | ESS
76+
------------------------------------------------------------------------------
77+
SD (Intercept: Subject) | 26.63 | [15.46, 42.36] | 100% | 1.002 | 1823
78+
SD (Days: Subject) | 6.58 | [ 4.12, 10.16] | 100% | 1.000 | 1228
79+
Cor (Intercept~Days: Subject) | 0.09 | [-0.47, 0.67] | 60.42% | 1.003 | 899
8080
Message
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Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -89,24 +89,24 @@
8989
Output
9090
# Fixed Effects
9191
92-
Parameter | Mean | 95% CI | pd | Rhat | ESS
93-
----------------------------------------------------------------
94-
(Intercept) | 250.84 | [228.76, 272.54] | 100% | 1.003 | 786.00
95-
Days | 10.37 | [ 8.77, 11.96] | 100% | 0.999 | 6026.00
92+
Parameter | Mean | 95% CI | pd | Rhat | ESS
93+
-------------------------------------------------------------
94+
(Intercept) | 250.84 | [228.76, 272.54] | 100% | 1.003 | 786
95+
Days | 10.37 | [ 8.77, 11.96] | 100% | 0.999 | 6026
9696
9797
# Sigma
9898
99-
Parameter | Mean | 95% CI | pd | Rhat | ESS
100-
-----------------------------------------------------------
101-
sigma | 30.03 | [26.27, 34.03] | 100% | 0.999 | 2102.00
99+
Parameter | Mean | 95% CI | pd | Rhat | ESS
100+
--------------------------------------------------------
101+
sigma | 30.03 | [26.27, 34.03] | 100% | 0.999 | 2102
102102
103103
# Random Effects Variances
104104
105-
Parameter | Mean | 95% CI | pd | Rhat | ESS
106-
----------------------------------------------------------------------------
107-
SD (Intercept: grp) | 8.22 | [ 0.44, 25.69] | 100% | 1.000 | 1604.00
108-
SD (Intercept: grp:subgrp) | 7.41 | [ 0.44, 16.87] | 100% | 1.003 | 770.00
109-
SD (Intercept: Subject) | 38.51 | [26.89, 55.98] | 100% | 1.003 | 1254.00
105+
Parameter | Mean | 95% CI | pd | Rhat | ESS
106+
-------------------------------------------------------------------------
107+
SD (Intercept: grp) | 8.22 | [ 0.44, 25.69] | 100% | 1.000 | 1604
108+
SD (Intercept: grp:subgrp) | 7.41 | [ 0.44, 16.87] | 100% | 1.003 | 770
109+
SD (Intercept: Subject) | 38.51 | [26.89, 55.98] | 100% | 1.003 | 1254
110110
Message
111111
112112
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -119,22 +119,22 @@
119119
Output
120120
# Fixed Effects
121121
122-
Parameter | Mean | 95% CI | pd | Rhat | ESS
123-
------------------------------------------------------------
124-
(Intercept) | 2.57 | [0.70, 4.84] | 99.42% | 1.012 | 292.00
125-
Petal.Width | 1.05 | [0.73, 1.37] | 100% | 1.002 | 2150.00
122+
Parameter | Mean | 95% CI | pd | Rhat | ESS
123+
---------------------------------------------------------
124+
(Intercept) | 2.57 | [0.70, 4.84] | 99.42% | 1.012 | 292
125+
Petal.Width | 1.05 | [0.73, 1.37] | 100% | 1.002 | 2150
126126
127127
# Sigma
128128
129-
Parameter | Mean | 95% CI | pd | Rhat | ESS
130-
--------------------------------------------------------
131-
sigma | 0.38 | [0.34, 0.43] | 100% | 1.001 | 2642.00
129+
Parameter | Mean | 95% CI | pd | Rhat | ESS
130+
-----------------------------------------------------
131+
sigma | 0.38 | [0.34, 0.43] | 100% | 1.001 | 2642
132132
133133
# Random Effects Variances
134134
135-
Parameter | Mean | 95% CI | pd | Rhat | ESS
136-
---------------------------------------------------------------------
137-
SD (Intercept: Species) | 1.68 | [0.64, 3.64] | 100% | 1.003 | 796.00
135+
Parameter | Mean | 95% CI | pd | Rhat | ESS
136+
------------------------------------------------------------------
137+
SD (Intercept: Species) | 1.68 | [0.64, 3.64] | 100% | 1.003 | 796
138138
Message
139139
140140
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -147,25 +147,25 @@
147147
Output
148148
# Fixed Effects
149149
150-
Parameter | Mean | 95% CI | pd | Rhat | ESS
151-
--------------------------------------------------------------
152-
(Intercept) | 33.06 | [24.70, 40.47] | 100% | 1.006 | 744.00
153-
wt | -4.39 | [-6.94, -1.76] | 99.72% | 1.025 | 83.00
150+
Parameter | Mean | 95% CI | pd | Rhat | ESS
151+
-----------------------------------------------------------
152+
(Intercept) | 33.06 | [24.70, 40.47] | 100% | 1.006 | 744
153+
wt | -4.39 | [-6.94, -1.76] | 99.72% | 1.025 | 83
154154
155155
# Sigma
156156
157-
Parameter | Mean | 95% CI | pd | Rhat | ESS
158-
-------------------------------------------------------
159-
sigma | 2.59 | [1.96, 3.48] | 100% | 1.010 | 608.00
157+
Parameter | Mean | 95% CI | pd | Rhat | ESS
158+
----------------------------------------------------
159+
sigma | 2.59 | [1.96, 3.48] | 100% | 1.010 | 608
160160
161161
# Random Effects Variances
162162
163-
Parameter | Mean | 95% CI | pd | Rhat | ESS
164-
---------------------------------------------------------------------------
165-
SD (Intercept: cyl) | 3.19 | [ 0.49, 9.00] | 100% | 1.001 | 651.00
166-
SD (Intercept: gear) | 3.76 | [ 0.14, 10.13] | 100% | 1.015 | 643.00
167-
SD (wt: gear) | 1.47 | [ 0.06, 3.96] | 100% | 1.039 | 94.00
168-
Cor (Intercept~wt: gear) | -0.38 | [-0.99, 0.82] | 76.85% | 1.003 | 854.00
163+
Parameter | Mean | 95% CI | pd | Rhat | ESS
164+
------------------------------------------------------------------------
165+
SD (Intercept: cyl) | 3.19 | [ 0.49, 9.00] | 100% | 1.001 | 651
166+
SD (Intercept: gear) | 3.76 | [ 0.14, 10.13] | 100% | 1.015 | 643
167+
SD (wt: gear) | 1.47 | [ 0.06, 3.96] | 100% | 1.039 | 94
168+
Cor (Intercept~wt: gear) | -0.38 | [-0.99, 0.82] | 76.85% | 1.003 | 854
169169
Message
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171171
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -178,31 +178,31 @@
178178
Output
179179
# Fixed Effects
180180
181-
Parameter | Mean | 95% CI | pd | Rhat | ESS
182-
-------------------------------------------------------------
183-
(Intercept) | -1.07 | [-1.42, -0.73] | 100% | 1.000 | 3259.00
184-
persons | 0.90 | [ 0.81, 0.99] | 100% | 1.000 | 3305.00
185-
child | -1.17 | [-1.37, -0.99] | 100% | 1.000 | 3224.00
186-
camper | 0.74 | [ 0.56, 0.94] | 100% | 1.000 | 4166.00
181+
Parameter | Mean | 95% CI | pd | Rhat | ESS
182+
----------------------------------------------------------
183+
(Intercept) | -1.07 | [-1.42, -0.73] | 100% | 1.000 | 3259
184+
persons | 0.90 | [ 0.81, 0.99] | 100% | 1.000 | 3305
185+
child | -1.17 | [-1.37, -0.99] | 100% | 1.000 | 3224
186+
camper | 0.74 | [ 0.56, 0.94] | 100% | 1.000 | 4166
187187
188188
# Zero-Inflation
189189
190-
Parameter | Mean | 95% CI | pd | Rhat | ESS
191-
--------------------------------------------------------------
192-
(Intercept) | -0.58 | [-1.27, 0.08] | 95.97% | 1.000 | 4494.00
193-
child | 1.24 | [ 0.71, 1.82] | 100% | 1.000 | 4195.00
194-
camper | -0.62 | [-1.38, 0.11] | 94.73% | 1.000 | 4427.00
190+
Parameter | Mean | 95% CI | pd | Rhat | ESS
191+
-----------------------------------------------------------
192+
(Intercept) | -0.58 | [-1.27, 0.08] | 95.97% | 1.000 | 4494
193+
child | 1.24 | [ 0.71, 1.82] | 100% | 1.000 | 4195
194+
camper | -0.62 | [-1.38, 0.11] | 94.73% | 1.000 | 4427
195195

196196
---
197197

198198
Code
199199
mp9
200200
Output
201-
Parameter | Mean | 95% CI | pd | Rhat | ESS
202-
-----------------------------------------------------------------
203-
Intercept[1] | -38.42 | [-67.76, -19.66] | 100% | 1.002 | 992.00
204-
Intercept[2] | -33.26 | [-59.09, -16.53] | 100% | 1.001 | 1039.00
205-
mpg | -1.80 | [ -3.20, -0.90] | 100% | 1.002 | 1021.00
201+
Parameter | Mean | 95% CI | pd | Rhat | ESS
202+
--------------------------------------------------------------
203+
Intercept[1] | -38.42 | [-67.76, -19.66] | 100% | 1.002 | 992
204+
Intercept[2] | -33.26 | [-59.09, -16.53] | 100% | 1.001 | 1039
205+
mpg | -1.80 | [ -3.20, -0.90] | 100% | 1.002 | 1021
206206
Message
207207
208208
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -215,17 +215,17 @@
215215
Output
216216
# Fixed Effects
217217
218-
Parameter | Median | 95% CI | pd | Rhat | ESS
219-
----------------------------------------------------------------
220-
(Intercept) | 39.68 | [36.12, 43.27] | 100% | 1.000 | 5242.00
221-
wt | -3.20 | [-4.79, -1.65] | 99.95% | 1.000 | 2071.00
222-
cyl | -1.49 | [-2.36, -0.64] | 99.95% | 1.000 | 1951.00
218+
Parameter | Median | 95% CI | pd | Rhat | ESS
219+
-------------------------------------------------------------
220+
(Intercept) | 39.68 | [36.12, 43.27] | 100% | 1.000 | 5242
221+
wt | -3.20 | [-4.79, -1.65] | 99.95% | 1.000 | 2071
222+
cyl | -1.49 | [-2.36, -0.64] | 99.95% | 1.000 | 1951
223223
224224
# Sigma
225225
226-
Parameter | Median | 95% CI | pd | Rhat | ESS
227-
----------------------------------------------------------
228-
sigma | 2.63 | [2.06, 3.51] | 100% | 1.000 | 2390.00
226+
Parameter | Median | 95% CI | pd | Rhat | ESS
227+
-------------------------------------------------------
228+
sigma | 2.63 | [2.06, 3.51] | 100% | 1.000 | 2390
229229
Message
230230
231231
Uncertainty intervals (equal-tailed) computed using a MCMC distribution
@@ -238,17 +238,17 @@
238238
Output
239239
# Fixed Effects
240240
241-
Parameter | Median | 95% CI | pd | Rhat | ESS
242-
----------------------------------------------------------------
243-
(Intercept) | 39.68 | [36.27, 43.34] | 100% | 1.000 | 5242.00
244-
wt | -3.20 | [-4.70, -1.57] | 99.95% | 1.000 | 2071.00
245-
cyl | -1.49 | [-2.38, -0.68] | 99.95% | 1.000 | 1951.00
241+
Parameter | Median | 95% CI | pd | Rhat | ESS
242+
-------------------------------------------------------------
243+
(Intercept) | 39.68 | [36.27, 43.34] | 100% | 1.000 | 5242
244+
wt | -3.20 | [-4.70, -1.57] | 99.95% | 1.000 | 2071
245+
cyl | -1.49 | [-2.38, -0.68] | 99.95% | 1.000 | 1951
246246
247247
# Sigma
248248
249-
Parameter | Median | 95% CI | pd | Rhat | ESS
250-
----------------------------------------------------------
251-
sigma | 2.63 | [1.99, 3.39] | 100% | 1.000 | 2390.00
249+
Parameter | Median | 95% CI | pd | Rhat | ESS
250+
-------------------------------------------------------
251+
sigma | 2.63 | [1.99, 3.39] | 100% | 1.000 | 2390
252252
Message
253253
254254
Uncertainty intervals (highest-density) computed using a MCMC

‎tests/testthat/_snaps/wrs2.md‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -5,7 +5,7 @@
55
Output
66
Group1 | Group2 | Psihat | 95% CI | p
77
-------------------------------------------------
8-
placebo | low | -1.00 | [-5.32, 3.32] | 0.435
9-
placebo | high | -3.00 | [-7.32, 1.32] | 0.181
10-
low | high | -2.00 | [-6.32, 2.32] | 0.317
8+
placebo | low | -1 | [-5.32, 3.32] | 0.435
9+
placebo | high | -3 | [-7.32, 1.32] | 0.181
10+
low | high | -2 | [-6.32, 2.32] | 0.317
1111

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