Issue converting EML to ISO

[yvanlebras]

Hi geometa team!

I am trying to use geometa to convert EML to ISO, I am using this command my_geometa_object <- as(emld, "ISOMetadata") using emld object created from an EML 2.2.0 xml file through emld <- as_emld(file_path), as it seems we need to use looking at the wiki https://github.com/eblondel/geometa/wiki

My error message:

Error in as(emld, "ISOMetadata"): no method or default for coercing “emld” to “ISOMetadata”
Traceback:

1. stop(gettextf("no method or default for coercing %s to %s", dQuote(thisClass), 
 .     dQuote(Class)), domain = NA)
2. .handleSimpleError(function (cnd) 
 . {
 .     watcher$capture_plot_and_output()
 .     cnd <- sanitize_call(cnd)
 .     watcher$push(cnd)
 .     switch(on_error, continue = invokeRestart("eval_continue"), 
 .         stop = invokeRestart("eval_stop"), error = NULL)
 . }, "no method or default for coercing “emld” to “ISOMetadata”", 
 .     base::quote(as(emld, "ISOMetadata")))

Sorry if this is just I am a stupid user ;)

Have a nice day!

[eblondel]

Can you send a code to reproduce your error? Thanks

[yvanlebras]

THANK you for your rapid feedback Emmanuel !
It seems to me I can share you the code and env where I am trying it using Galaxy Ecology Europe instance: https://ecology.usegalaxy.eu/interactivetool/ep/2bms2zt33p4hj/18bqa9rw5fymb/ipython/lab/tree/EMLtoISO_geometa_end_2.ipynb Don't hesitate to say to me if you need more time to look at it, I will delete this JupyterLab Galaxy tool deploiment tomorrow morning

[yvanlebras]

I will shutdown the JupyterLab instance, the Jupyter Notebook with code I am trying to execute is available here https://ecology.usegalaxy.eu/datasets/4838ba20a6d86765a4db51ac6a9b4767/preview if it works fine

[eblondel]

I will try to find some time to check, but as said in #208 these converters are highly experimental, and there was no maintenance over it, not being the core goal of geometa.