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There isn't a list of supported extensions in the code. Some formats are inferred from the extension, but others have several known extensions (for example PE files) and are rather inferred from the file structure. You can get a look at the detection mechanism by browsing the classes in the net.jsign.spi package.

Here is a list of extensions supported by Jsign:

.appx
.appxbundle
.cab
.cat
.cpl
.dll
.drx
.efi
.exe
.js
.jse
.msi
.msix
.msixbundle
.msm
.msp
.navx
.nupkg
.ocx
.ps1
.ps1xml
.psd1
.psm1
.scr
.sys
.vbe
.vbs
.wsf

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@varszegimarcell
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@ebourg
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