Merge pull request #176 from ec-jrc/telemac

[telemac] added telemac support

Author: brey

.github/workflows/conda_pip.yml

@@ -40,6 +40,8 @@ jobs:
       - name: "Install Python dependencies"
         run: "pip install 'black'"
 
+      - run: "black --version"
+
       - name: "Run linters"
         run: "black --diff ./"
 
@@ -61,11 +63,14 @@ jobs:
       SCHISM_ENV: "SCHISM_ENV"
       DELFT3D_ENV: "DELFT3D_ENV"
       PYPOSEIDON_ENV: "PYPOSEIDON_ENV"
+      PYPOS_TEL_ENV: "PYPOS_TEL_ENV"
       #
       SCHISM_LOCK: locks/conda-${{ matrix.os }}-schism_${{ matrix.mpi }}.lock
       DELFT3D_LOCK: locks/conda-${{ matrix.os }}-delft3d_${{ matrix.mpi }}.lock
       PYPOSEIDON_LOCK: locks/conda-${{ matrix.os }}-binary-p${{ matrix.python }}.lock
+      PYPOS_TEL_LOCK: locks/conda-${{ matrix.os }}-binary-telemac-p${{ matrix.python }}.lock
       REQUIREMENTS_CI: locks/requirements-ci.txt
+      REQUIREMENTS_CI_TEL: locks/requirements-ci-telemac.txt
       REQUIREMENTS_VIZ: locks/requirements-viz.txt
 
     defaults:
@@ -92,6 +97,7 @@ jobs:
           channel_priority: strict
           channels:
             - gbrey
+            - tomsail
             - conda-forge
           EOF
       - run: cat ~/.condarc
@@ -123,6 +129,16 @@ jobs:
             ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-${{ hashFiles( env.PYPOSEIDON_LOCK )}}
             ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-
 
+      - name: "Cache ${{ env.PYPOS_TEL_ENV }}"
+        uses: actions/cache@v3
+        id: cache-PYPOS_TEL_ENV
+        with:
+          path: ~/micromamba/envs/${{ env.PYPOS_TEL_ENV }}
+          key: ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOS_TEL_ENV }}-${{ hashFiles( env.PYPOS_TEL_LOCK )}}-${{ hashFiles( env.REQUIREMENTS_CI_TEL )}}
+          restore-keys: |
+            ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOS_TEL_ENV }}-${{ hashFiles( env.PYPOS_TEL_LOCK )}}
+            ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOS_TEL_ENV }}-
+
       - name: Cache tests/data/
         uses: actions/cache@v3
         env:
@@ -144,11 +160,9 @@ jobs:
         if: steps.cache-PYPOSEIDON_ENV.outputs.cache-hit != 'true'
         run: micromamba create --yes --name ${PYPOSEIDON_ENV} -f ${PYPOSEIDON_LOCK}
 
-      - name: "Check schism version"
-        run: |
-          eval "$(micromamba shell hook)"
-          micromamba activate "${SCHISM_ENV}"
-          schism -v
+      - name: "Create ${{ env.PYPOS_TEL_ENV }}"
+        if: steps.cache-PYPOS_TEL_ENV.outputs.cache-hit != 'true'
+        run: micromamba create --yes --name ${PYPOS_TEL_ENV} -f ${PYPOS_TEL_LOCK}
 
       - name: "Install python dependencies"
         run: |
@@ -158,6 +172,14 @@ jobs:
           python -mpip install -r "${REQUIREMENTS_CI}"
           python -mpip install ./
 
+      - name: "Install python dependencies for pyposeidon + telemac"
+        run: |
+          eval "$(micromamba shell hook)"
+          micromamba activate "${PYPOS_TEL_ENV}"
+          python -mpip install -U pip
+          python -mpip install -r "${REQUIREMENTS_CI_TEL}"
+          python -mpip install ./
+
       - name: "Run tests: Basic"
         run: |
           eval "$(micromamba shell hook)"
@@ -178,14 +200,18 @@ jobs:
         run: |
           eval "$(micromamba shell hook)"
           micromamba activate "${SCHISM_ENV}"
-          # micromamba activate --stack "${DELFT3D_ENV}"
           micromamba activate --stack "${PYPOSEIDON_ENV}"
           make test_schism
 
       - name: "Run tests: Delft"
         run: |
           eval "$(micromamba shell hook)"
-          # micromamba activate "${SCHISM_ENV}"
-          micromamba activate --stack "${DELFT3D_ENV}"
+          micromamba activate "${DELFT3D_ENV}"
           micromamba activate --stack "${PYPOSEIDON_ENV}"
           make test_delft
+
+      - name: "Run tests: TELEMAC"
+        run: |
+          eval "$(micromamba shell hook)"
+          micromamba activate "${PYPOS_TEL_ENV}"
+          make test_telemac

Makefile

@@ -6,10 +6,10 @@ init:
 	poetry install -E viz --with dev --with docs --with test
 
 test:
-	pytest -vl --durations=10 -m 'not (schism or delft or viz or slow)' -n auto
+	pytest -vl --durations=10 -m 'not (schism or delft or telemac or viz or slow)' -n auto
 
 test_fail:
-	pytest -vl --lf --runschism --rundelft --runviz
+	pytest -vl --lf --runschism --rundelft --runtelemac --runviz
 
 test_viz:
 	pytest -vl --durations=10 --runviz -m viz
@@ -20,8 +20,11 @@ test_schism:
 test_delft:
 	pytest -vl --durations=10 --rundelft -m delft
 
+test_telemac:
+	pytest -vl --durations=10 --runtelemac -m telemac
+
 test_full:
-	pytest -vl --durations=20 --runschism --rundelft --runviz
+	pytest -vl --durations=20 --runschism --rundelft --runtelemac --runviz
 
 conda_lock:
 	./scripts/generate_envs.sh
@@ -32,6 +35,7 @@ poetry_lock:
 	poetry export --without-hashes -f requirements.txt -o locks/requirements.txt
 	poetry export --without-hashes -f requirements.txt --extras viz -o locks/requirements-viz.txt
 	poetry export --without-hashes -f requirements.txt --with dev --with test -o locks/requirements-ci.txt
+	poetry export --without-hashes -f requirements.txt --with dev --with test --with telemac -o locks/requirements-ci-telemac.txt
 	poetry export --without-hashes -f requirements.txt --extras viz --with dev --with docs --with test -o locks/requirements-full.txt
 
 lock: \