chore: synced file(s) with ecmwf/reusable-workflows (#25)

Co-authored-by: Harrison Cook <harrison.cook@ecmwf.int>

Author: DeployDuck

.github/workflows/pr-label-ats.yml

@@ -0,0 +1,66 @@
+# This workflow checks that the appropriate ATS labels are applied to a pull request:
+# - "ATS Approval Not Needed": pass
+# - "ATS Approved": pass
+# - "ATS Approval Needed": fail
+# - Missing ATS label: fail
+
+name: "[PR] ATS labels"
+
+on:
+  pull_request:
+    types:
+      - opened
+      - edited
+      - reopened
+      - labeled
+      - unlabeled
+      - synchronize
+
+permissions:
+  pull-requests: read
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Get PR details
+        uses: actions/github-script@v7
+        id: check-pr
+        with:
+          script: |
+            const pr = await github.rest.pulls.get({
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              pull_number: context.payload.pull_request.number,
+            });
+            const labels = pr.data.labels.map(label => label.name);
+            core.setOutput('labels', JSON.stringify(labels));
+            core.setOutput('author', context.payload.pull_request.user.login);
+
+      - name: Evaluate ATS labels
+        run: |
+          AUTHOR='${{ steps.check-pr.outputs.author }}'
+          if [ "$AUTHOR" == "DeployDuck" ] || [ "$AUTHOR" == "pre-commit-ci[bot]" ]; then
+            echo "Bot PR, skipping."
+            exit 0
+          fi
+          LABELS=$(echo '${{ steps.check-pr.outputs.labels }}' | jq -r '.[]')
+          echo "Labels found:"
+          echo -e "$LABELS\n"
+          echo "Result:"
+          if echo "$LABELS" | grep -qi "ATS approval not needed"; then
+            echo "ATS approval not needed. Passing."
+            EXIT_CODE=0
+          elif echo "$LABELS" | grep -qi "ATS approved"; then
+            echo "ATS Approved. Passing."
+            EXIT_CODE=0
+          elif echo "$LABELS" | grep -qi "ATS approval needed"; then
+            echo "ATS Approval Needed. Failing."
+            EXIT_CODE=1
+          else
+            echo "No ATS approval labels found. Please assign the appropriate ATS label. Failing."
+            EXIT_CODE=1
+          fi
+          echo -e "\nFor more information on ATS labels, see:"
+          echo "https://anemoi.readthedocs.io/en/latest/contributing/guidelines.html#labelling-guidelines"
+          exit $EXIT_CODE

.gitignore

@@ -141,3 +141,8 @@ _version.py
 *.to_upload
 tempCodeRunnerFile.python
 Untitled-*.py
+trace.txt
+?/
+*.prof
+prof/
+*.gz

.pre-commit-config.yaml

@@ -10,7 +10,7 @@ repos:
     entry: jupyter nbconvert --ClearOutputPreprocessor.enabled=True --inplace
     additional_dependencies: [jupyter]
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v5.0.0
+  rev: v6.0.0
   hooks:
   - id: check-yaml # Check YAML files for syntax errors only
     args: [--unsafe, --allow-multiple-documents]
@@ -20,19 +20,19 @@ repos:
   - id: no-commit-to-branch # Prevent committing to main / master
   - id: check-added-large-files # Check for large files added to git
   - id: check-merge-conflict # Check for files that contain merge conflict
--   repo: https://github.com/pre-commit/pygrep-hooks
-    rev: v1.10.0  # Use the ref you want to point at
-    hooks:
-    -   id: python-use-type-annotations # Check for missing type annotations
-    -   id: python-check-blanket-noqa # Check for # noqa: all
-    -   id: python-no-log-warn # Check for log.warn
+- repo: https://github.com/pre-commit/pygrep-hooks
+  rev: v1.10.0  # Use the ref you want to point at
+  hooks:
+  - id: python-use-type-annotations # Check for missing type annotations
+  - id: python-check-blanket-noqa # Check for # noqa: all
+  - id: python-no-log-warn # Check for log.warn
 - repo: https://github.com/psf/black-pre-commit-mirror
-  rev: 25.1.0
+  rev: 25.9.0
   hooks:
   - id: black
     args: [--line-length=120]
 - repo: https://github.com/pycqa/isort
-  rev: 6.0.1
+  rev: 7.0.0
   hooks:
   - id: isort
     args:
@@ -41,7 +41,7 @@ repos:
     - --profile black
     - --project anemoi
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.12.7
+  rev: v0.14.3
   hooks:
   - id: ruff
     args:
@@ -50,7 +50,7 @@ repos:
     - --exit-non-zero-on-fix
     - --exclude=docs/**/*_.py
 - repo: https://github.com/sphinx-contrib/sphinx-lint
-  rev: v1.0.0
+  rev: v1.0.1
   hooks:
   - id: sphinx-lint
 # For now, we use it. But it does not support a lot of sphinx features
@@ -65,20 +65,21 @@ repos:
   - id: docconvert
     args: ["numpy"]
 - repo: https://github.com/tox-dev/pyproject-fmt
-  rev: "v2.6.0"
+  rev: "v2.11.0"
   hooks:
   - id: pyproject-fmt
--   repo: https://github.com/jshwi/docsig # Check docstrings against function sig
-    rev: v0.71.0
-    hooks:
-    -   id: docsig
-        args:
-        - --ignore-no-params # Allow docstrings without parameters
-        - --check-dunders    # Check dunder methods
-        - --check-overridden # Check overridden methods
-        - --check-protected  # Check protected methods
-        - --check-class      # Check class docstrings
-        - --disable=SIG101,SIG102     # Disable empty docstrings
+    args: ["--max-supported-python", "3.12"]
+- repo: https://github.com/jshwi/docsig # Check docstrings against function sig
+  rev: v0.71.0
+  hooks:
+  - id: docsig
+    args:
+    - --ignore-no-params # Allow docstrings without parameters
+    - --check-dunders    # Check dunder methods
+    - --check-overridden # Check overridden methods
+    - --check-protected  # Check protected methods
+    - --check-class      # Check class docstrings
+    - --disable=SIG101,SIG102     # Disable empty docstrings
 ci:
   autoupdate_schedule: monthly
   autoupdate_commit_msg: "chore(deps): pre-commit.ci autoupdate"

CONTRIBUTORS.md

@@ -1,6 +1,6 @@
 ## How to Contribute
 
-Please see the [read the docs](https://anemoi.readthedocs.io/en/latest/dev/contributing.html).
+Please see the [read the docs](https://anemoi.readthedocs.io/en/latest/contributing/contributing.html).
 
 
 ## Contributors
@@ -10,4 +10,4 @@ Thank you to all the wonderful people who have contributed to Anemoi. Contributi
 
 ## Contributing Organisations
 
-Significant contributions have been made by the following organisations: [DWD](https://www.dwd.de/), [FMI](https://www.ilmatieteenlaitos.fi/), [KNMI](https://www.knmi.nl), [MET Norway](https://www.met.no/), [MeteoSwiss](https://www.meteoswiss.admin.ch/), [RMI](https://www.meteo.be/) & [ECMWF](https://www.ecmwf.int/)
+Significant contributions have been made by the following organisations: [DMI](https://www.dmi.dk/), [DWD](https://www.dwd.de/), [FMI](https://www.ilmatieteenlaitos.fi/), [KNMI](https://www.knmi.nl), [MET Norway](https://www.met.no/), [MeteoSwiss](https://www.meteoswiss.admin.ch/), [RMI](https://www.meteo.be/), [Met Office](https://www.metoffice.gov.uk/), [Météo-France](https://meteofrance.com/) & [ECMWF](https://www.ecmwf.int/)

README.md

@@ -1,16 +1,30 @@
 # anemoi-plugins
 
-**DISCLAIMER**
-This project is **BETA** and will be **Experimental** for the foreseeable future.
-Interfaces and functionality are likely to change, and the project itself may be scrapped.
-**DO NOT** use this software in any project/software that is operational.
+<p align="center">
+  <a href="https://github.com/ecmwf/codex/raw/refs/heads/main/Project Maturity">
+    <img src="https://github.com/ecmwf/codex/raw/refs/heads/main/Project Maturity/incubating_badge.svg" alt="Maturity Level">
+  </a>
+  <a href="https://opensource.org/licenses/apache-2-0">
+    <img src="https://img.shields.io/badge/Licence-Apache 2.0-blue.svg" alt="Licence">
+  </a>
+  <a href="https://github.com/ecmwf/anemoi-plugins/releases">
+    <img src="https://img.shields.io/github/v/release/ecmwf/anemoi-plugins?color=purple&label=Release" alt="Latest Release">
+  </a>
+</p>
+
+> \[!IMPORTANT\]
+> This software is **Incubating** and subject to ECMWF's guidelines on [Software Maturity](https://github.com/ecmwf/codex/raw/refs/heads/main/Project%20Maturity).
 
 
 
 ## Documentation
 
 The documentation can be found at https://anemoi-plugins.readthedocs.io/.
 
+## Contributing
+
+You can find information about contributing to Anemoi at our [Contribution page](https://anemoi.readthedocs.io/en/latest/contributing/contributing.html).
+
 ## Install
 
 Install via `pip` with:

docs/examples/datasets-create-source-basic-source/pyproject.toml

@@ -29,7 +29,6 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
-  "Programming Language :: Python :: 3.13",
   "Programming Language :: Python :: Implementation :: CPython",
   "Programming Language :: Python :: Implementation :: PyPy",
 ]

docs/examples/datasets-create-source-xarray-source/pyproject.toml

@@ -29,7 +29,6 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
-  "Programming Language :: Python :: 3.13",
   "Programming Language :: Python :: Implementation :: CPython",
   "Programming Language :: Python :: Implementation :: PyPy",
 ]

plugins/inference/inputs/example/pyproject.toml

@@ -21,7 +21,6 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
-  "Programming Language :: Python :: 3.13",
   "Programming Language :: Python :: Implementation :: CPython",
   "Programming Language :: Python :: Implementation :: PyPy",
 ]

plugins/transform/filters/filter1/pyproject.toml

@@ -21,7 +21,6 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
-  "Programming Language :: Python :: 3.13",
   "Programming Language :: Python :: Implementation :: CPython",
   "Programming Language :: Python :: Implementation :: PyPy",
 ]

plugins/transform/filters/filter2/pyproject.toml

@@ -21,7 +21,6 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
-  "Programming Language :: Python :: 3.13",
   "Programming Language :: Python :: Implementation :: CPython",
   "Programming Language :: Python :: Implementation :: PyPy",
 ]