Merge pull request #43 from ehrlinger/NoSurvivalVignette

No survival vignette.
MAC-OS action will not compile vignettes because of pandoc dependency issues.

Author: ehrlinger

.Rbuildignore

@@ -3,7 +3,6 @@
 ^\.Rproj\.user$     # used for temporary files. 
 ^README\.Rmd$       # An Rmarkdown file used to generate README.md
 ^cran-comments\.md$ # Comments for CRAN submission
-^NEWS\.md$          # A news file written in Markdown
 ^\.travis\.yml$    # Used for continuous integration testing with traviswercker.yml
 ^\.coveralls\.yml$
 ^packrat$

CRAN-SUBMISSION

@@ -0,0 +1,3 @@
+Version: 2.2.1
+Date: 2022-08-31 19:22:49 UTC
+SHA: cd49c467ed40ddc2550ee0053af7351d611eb5a1

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: ggRandomForests
 Type: Package
 Title: Visually Exploring Random Forests
-Version: 2.2.0
-Date: 2022-05-09
+Version: 2.2.1
+Date: 2022-08-31
 Author: John Ehrlinger <[email protected]>
 Maintainer: John Ehrlinger <[email protected]>
 License: GPL (>=3)
@@ -34,7 +34,5 @@ Suggests:
     plot3D,
     lintr,
     datasets
-RoxygenNote: 7.1.2
-LazyData: true
-LazyDataCompression: bzip2
+RoxygenNote: 7.2.1
 VignetteBuilder: knitr

NAMESPACE

@@ -40,7 +40,6 @@ S3method(plot,gg_survival)
 S3method(plot,gg_variable)
 S3method(plot,gg_vimp)
 S3method(print,gg_minimal_depth)
-export(cache_rfsrc_datasets)
 export(calc_auc)
 export(calc_roc)
 export(combine.gg_partial)
@@ -93,7 +92,6 @@ importFrom(parallel,mclapply)
 importFrom(randomForest,randomForest)
 importFrom(randomForestSRC,find.interaction)
 importFrom(randomForestSRC,plot.variable)
-importFrom(randomForestSRC,rfsrc)
 importFrom(randomForestSRC,var.select)
 importFrom(randomForestSRC,vimp)
 importFrom(stats,median)
@@ -107,6 +105,5 @@ importFrom(survival,Surv)
 importFrom(survival,strata)
 importFrom(survival,survfit)
 importFrom(tidyr,gather)
-importFrom(utils,data)
 importFrom(utils,head)
 importFrom(utils,tail)

NEWS NEWS.mdNEWS renamed to NEWS.md

@@ -1,6 +1,9 @@
 Package: ggRandomForests
-Version: 2.2.0
+Version: 2.2.1
 
+ggRandomForests v2.2.1
+=====================
+* Fix docs for HTML5/Roxygen update
 
 ggRandomForests v2.2.0
 =====================
@@ -11,12 +14,12 @@ ggRandomForests v2.2.0
 ggRandomForests v2.1.0
 =====================
 To pull this out of archive on randomForestSRC 3.1 build release.
-Fixed a plot bug for gg_error to show the actual curve (issue #35)
+Fixed a plot bug for gg_error to show the actual curve (issue 35)
 
 ggRandomForests v2.0.1
 ======================
 * Correct a bug in survival plots when predicting on future data without a known outcome.
-* ALL Vignettes are now at https://github.com/ehrlinger/ggRFVignette
+* All Vignettes are now at https://github.com/ehrlinger/ggRFVignette
 * All tests are being moved to https://github.com/ehrlinger/ggRFVignette
 * Begin work on rewriting all checks to not use cached data. 
   This will require more runtime, and hence we will run fewer of them on CRAN release. 
@@ -26,20 +29,20 @@ ggRandomForests v2.0.0
 ======================
 * Added initial support for the randomForest package
 * Updated cache files for randomForestSRC 2.2.0 release.
-* Remove regression vignettes to meet CRAN size limts. These remain available at the package source https://github.com/ehrlinger/ggRandomForests
+* Remove regression vignettes to meet CRAN size limits. These remain available at the package source https://github.com/ehrlinger/ggRandomForests
 * Minor bug and documentation fixes.
 
 ggRandomForests v1.2.1
 ======================
 * Update cached datasets for randomForestSRC 2.0.0 release. 
-* Correct some vignette formatting errors (thx Joe Smith)
+* Correct some vignette formatting errors (thanks Joe Smith)
 
 ggRandomForests v1.2.0
 ======================
 * Convert to semantic versioning http://semver.org/
 * Updates for release of ggplot2 2.0.0
 * Change from reshape2::melt dependence to tidyr::gather
-* Optimize tests for CRAN to optimise R CMD CHECK times.
+* Optimize tests for CRAN to optimize R CMD CHECK times.
 
 
 ggRandomForests v1.1.4
@@ -116,4 +119,4 @@ ggRandomForests v1.0.0
 
 ggRandomForests v0.2
 ======================
-* Initial useR!2014 release. 
+* Initial useR!2014 release.