DEPS: Bump optional dependencies (pandas-dev#60655)

* Bump optional dependencies

* Remove version workarounds

* Remove a min_version

* Consolidate all optional-dependency:

* Revert "Consolidate all optional-dependency:"

This reverts commit e689e1b.

* Bump blosc

* Unbump pycopg2

* Undo pytables

* Undo sqlalchemy

* Remove sqlalchemy from whatsnew

* undo blosc and lxml

* Move adbc packages to conda

* Revert "Move adbc packages to conda"

This reverts commit 39cdaf1.

* Revert "Revert "Move adbc packages to conda""

This reverts commit 9ba03c4.

* Revert "Move adbc packages to conda"

This reverts commit 39cdaf1.

Author: mroeschke

ci/deps/actions-310-minimum_versions.yaml

@@ -25,39 +25,39 @@ dependencies:
   - numpy=1.23.5
 
   # optional dependencies
-  - beautifulsoup4=4.11.2
+  - beautifulsoup4=4.12.3
   - blosc=1.21.3
   - bottleneck=1.3.6
-  - fastparquet=2023.10.0
-  - fsspec=2022.11.0
+  - fastparquet=2024.2.0
+  - fsspec=2024.2.0
   - html5lib=1.1
   - hypothesis=6.84.0
-  - gcsfs=2022.11.0
-  - jinja2=3.1.2
+  - gcsfs=2024.2.0
+  - jinja2=3.1.3
   - lxml=4.9.2
-  - matplotlib=3.6.3
-  - numba=0.56.4
-  - numexpr=2.8.4
+  - matplotlib=3.8.3
+  - numba=0.59.0
+  - numexpr=2.9.0
   - odfpy=1.4.1
   - qtpy=2.3.0
-  - openpyxl=3.1.0
+  - openpyxl=3.1.2
   - psycopg2=2.9.6
   - pyarrow=10.0.1
-  - pymysql=1.0.2
+  - pymysql=1.1.0
   - pyqt=5.15.9
-  - pyreadstat=1.2.0
+  - pyreadstat=1.2.6
   - pytables=3.8.0
   - python-calamine=0.1.7
   - pytz=2023.4
   - pyxlsb=1.0.10
-  - s3fs=2022.11.0
-  - scipy=1.10.0
+  - s3fs=2024.2.0
+  - scipy=1.12.0
   - sqlalchemy=2.0.0
   - tabulate=0.9.0
-  - xarray=2022.12.0
+  - xarray=2024.1.1
   - xlrd=2.0.1
-  - xlsxwriter=3.0.5
-  - zstandard=0.19.0
+  - xlsxwriter=3.2.0
+  - zstandard=0.22.0
 
   - pip:
     - adbc-driver-postgresql==0.10.0

ci/deps/actions-310.yaml

@@ -23,39 +23,39 @@ dependencies:
   - numpy
 
   # optional dependencies
-  - beautifulsoup4>=4.11.2
+  - beautifulsoup4>=4.12.3
   - blosc>=1.21.3
   - bottleneck>=1.3.6
-  - fastparquet>=2023.10.0
-  - fsspec>=2022.11.0
+  - fastparquet>=2024.2.0
+  - fsspec>=2024.2.0
   - html5lib>=1.1
   - hypothesis>=6.84.0
-  - gcsfs>=2022.11.0
-  - jinja2>=3.1.2
+  - gcsfs>=2024.2.0
+  - jinja2>=3.1.3
   - lxml>=4.9.2
-  - matplotlib>=3.6.3
-  - numba>=0.56.4
-  - numexpr>=2.8.4
+  - matplotlib>=3.8.3
+  - numba>=0.59.0
+  - numexpr>=2.9.0
   - odfpy>=1.4.1
   - qtpy>=2.3.0
-  - openpyxl>=3.1.0
+  - openpyxl>=3.1.2
   - psycopg2>=2.9.6
   - pyarrow>=10.0.1
-  - pymysql>=1.0.2
+  - pymysql>=1.1.0
   - pyqt>=5.15.9
-  - pyreadstat>=1.2.0
+  - pyreadstat>=1.2.6
   - pytables>=3.8.0
   - python-calamine>=0.1.7
   - pytz>=2023.4
   - pyxlsb>=1.0.10
-  - s3fs>=2022.11.0
-  - scipy>=1.10.0
+  - s3fs>=2024.2.0
+  - scipy>=1.12.0
   - sqlalchemy>=2.0.0
   - tabulate>=0.9.0
-  - xarray>=2022.12.0, <=2024.9.0
+  - xarray>=2024.1.1, <=2024.9.0
   - xlrd>=2.0.1
-  - xlsxwriter>=3.0.5
-  - zstandard>=0.19.0
+  - xlsxwriter>=3.2.0
+  - zstandard>=0.22.0
 
   - pip:
     - adbc-driver-postgresql>=0.10.0

ci/deps/actions-311-downstream_compat.yaml

@@ -24,39 +24,39 @@ dependencies:
   - numpy
 
   # optional dependencies
-  - beautifulsoup4>=4.11.2
+  - beautifulsoup4>=4.12.3
   - blosc>=1.21.3
   - bottleneck>=1.3.6
-  - fastparquet>=2023.10.0
-  - fsspec>=2022.11.0
+  - fastparquet>=2024.2.0
+  - fsspec>=2024.2.0
   - html5lib>=1.1
   - hypothesis>=6.84.0
-  - gcsfs>=2022.11.0
-  - jinja2>=3.1.2
+  - gcsfs>=2024.2.0
+  - jinja2>=3.1.3
   - lxml>=4.9.2
-  - matplotlib>=3.6.3
-  - numba>=0.56.4
-  - numexpr>=2.8.4
+  - matplotlib>=3.8.3
+  - numba>=0.59.0
+  - numexpr>=2.9.0
   - odfpy>=1.4.1
   - qtpy>=2.3.0
-  - openpyxl>=3.1.0
+  - openpyxl>=3.1.2
   - psycopg2>=2.9.6
   - pyarrow>=10.0.1
-  - pymysql>=1.0.2
+  - pymysql>=1.1.0
   - pyqt>=5.15.9
-  - pyreadstat>=1.2.0
+  - pyreadstat>=1.2.6
   - pytables>=3.8.0
   - python-calamine>=0.1.7
   - pytz>=2023.4
   - pyxlsb>=1.0.10
-  - s3fs>=2022.11.0
-  - scipy>=1.10.0
+  - s3fs>=2024.2.0
+  - scipy>=1.12.0
   - sqlalchemy>=2.0.0
   - tabulate>=0.9.0
-  - xarray>=2022.12.0, <=2024.9.0
+  - xarray>=2024.1.1, <=2024.9.0
   - xlrd>=2.0.1
-  - xlsxwriter>=3.0.5
-  - zstandard>=0.19.0
+  - xlsxwriter>=3.2.0
+  - zstandard>=0.22.0
 
   # downstream packages
   - botocore

ci/deps/actions-311.yaml

@@ -23,39 +23,39 @@ dependencies:
   - numpy
 
   # optional dependencies
-  - beautifulsoup4>=4.11.2
+  - beautifulsoup4>=4.12.3
   - blosc>=1.21.3
   - bottleneck>=1.3.6
-  - fastparquet>=2023.10.0
-  - fsspec>=2022.11.0
+  - fastparquet>=2024.2.0
+  - fsspec>=2024.2.0
   - html5lib>=1.1
   - hypothesis>=6.84.0
-  - gcsfs>=2022.11.0
-  - jinja2>=3.1.2
+  - gcsfs>=2024.2.0
+  - jinja2>=3.1.3
   - lxml>=4.9.2
-  - matplotlib>=3.6.3
-  - numba>=0.56.4
-  - numexpr>=2.8.4
+  - matplotlib>=3.8.3
+  - numba>=0.59.0
+  - numexpr>=2.9.0
   - odfpy>=1.4.1
   - qtpy>=2.3.0
   - pyqt>=5.15.9
-  - openpyxl>=3.1.0
+  - openpyxl>=3.1.2
   - psycopg2>=2.9.6
   - pyarrow>=10.0.1
-  - pymysql>=1.0.2
-  - pyreadstat>=1.2.0
+  - pymysql>=1.1.0
+  - pyreadstat>=1.2.6
   - pytables>=3.8.0
   - python-calamine>=0.1.7
   - pytz>=2023.4
   - pyxlsb>=1.0.10
-  - s3fs>=2022.11.0
-  - scipy>=1.10.0
+  - s3fs>=2024.2.0
+  - scipy>=1.12.0
   - sqlalchemy>=2.0.0
   - tabulate>=0.9.0
-  - xarray>=2022.12.0, <=2024.9.0
+  - xarray>=2024.1.1, <=2024.9.0
   - xlrd>=2.0.1
-  - xlsxwriter>=3.0.5
-  - zstandard>=0.19.0
+  - xlsxwriter>=3.2.0
+  - zstandard>=0.22.0
 
   - pip:
     - adbc-driver-postgresql>=0.10.0

ci/deps/actions-312.yaml

@@ -23,39 +23,39 @@ dependencies:
   - numpy
 
   # optional dependencies
-  - beautifulsoup4>=4.11.2
+  - beautifulsoup4>=4.12.3
   - blosc>=1.21.3
   - bottleneck>=1.3.6
-  - fastparquet>=2023.10.0
-  - fsspec>=2022.11.0
+  - fastparquet>=2024.2.0
+  - fsspec>=2024.2.0
   - html5lib>=1.1
   - hypothesis>=6.84.0
-  - gcsfs>=2022.11.0
-  - jinja2>=3.1.2
+  - gcsfs>=2024.2.0
+  - jinja2>=3.1.3
   - lxml>=4.9.2
-  - matplotlib>=3.6.3
-  - numba>=0.56.4
-  - numexpr>=2.8.4
+  - matplotlib>=3.8.3
+  - numba>=0.59.0
+  - numexpr>=2.9.0
   - odfpy>=1.4.1
   - qtpy>=2.3.0
   - pyqt>=5.15.9
-  - openpyxl>=3.1.0
+  - openpyxl>=3.1.2
   - psycopg2>=2.9.6
   - pyarrow>=10.0.1
-  - pymysql>=1.0.2
-  - pyreadstat>=1.2.0
+  - pymysql>=1.1.0
+  - pyreadstat>=1.2.6
   - pytables>=3.8.0
   - python-calamine>=0.1.7
   - pytz>=2023.4
   - pyxlsb>=1.0.10
-  - s3fs>=2022.11.0
-  - scipy>=1.10.0
+  - s3fs>=2024.2.0
+  - scipy>=1.12.0
   - sqlalchemy>=2.0.0
   - tabulate>=0.9.0
-  - xarray>=2022.12.0, <=2024.9.0
+  - xarray>=2024.1.1, <=2024.9.0
   - xlrd>=2.0.1
-  - xlsxwriter>=3.0.5
-  - zstandard>=0.19.0
+  - xlsxwriter>=3.2.0
+  - zstandard>=0.22.0
 
   - pip:
     - adbc-driver-postgresql>=0.10.0

doc/source/getting_started/install.rst

@@ -183,9 +183,9 @@ Installable with ``pip install "pandas[performance]"``
 ===================================================== ================== ================== ===================================================================================================================================================================================
 Dependency                                            Minimum Version    pip extra          Notes
 ===================================================== ================== ================== ===================================================================================================================================================================================
-`numexpr <https://github.com/pydata/numexpr>`__       2.8.4              performance        Accelerates certain numerical operations by using multiple cores as well as smart chunking and caching to achieve large speedups
+`numexpr <https://github.com/pydata/numexpr>`__       2.9.0              performance        Accelerates certain numerical operations by using multiple cores as well as smart chunking and caching to achieve large speedups
 `bottleneck <https://github.com/pydata/bottleneck>`__ 1.3.6              performance        Accelerates certain types of ``nan`` by using specialized cython routines to achieve large speedup.
-`numba <https://github.com/numba/numba>`__            0.56.4             performance        Alternative execution engine for operations that accept ``engine="numba"`` using a JIT compiler that translates Python functions to optimized machine code using the LLVM compiler.
+`numba <https://github.com/numba/numba>`__            0.59.0             performance        Alternative execution engine for operations that accept ``engine="numba"`` using a JIT compiler that translates Python functions to optimized machine code using the LLVM compiler.
 ===================================================== ================== ================== ===================================================================================================================================================================================
 
 Visualization
@@ -196,8 +196,8 @@ Installable with ``pip install "pandas[plot, output-formatting]"``.
 ========================================================== ================== ================== =======================================================
 Dependency                                                 Minimum Version    pip extra          Notes
 ========================================================== ================== ================== =======================================================
-`matplotlib <https://github.com/matplotlib/matplotlib>`__  3.6.3              plot               Plotting library
-`Jinja2 <https://github.com/pallets/jinja>`__              3.1.2              output-formatting  Conditional formatting with DataFrame.style
+`matplotlib <https://github.com/matplotlib/matplotlib>`__  3.8.3              plot               Plotting library
+`Jinja2 <https://github.com/pallets/jinja>`__              3.1.3              output-formatting  Conditional formatting with DataFrame.style
 `tabulate <https://github.com/astanin/python-tabulate>`__  0.9.0              output-formatting  Printing in Markdown-friendly format (see `tabulate`_)
 ========================================================== ================== ================== =======================================================
 
@@ -209,8 +209,8 @@ Installable with ``pip install "pandas[computation]"``.
 ============================================== ================== =============== =======================================
 Dependency                                     Minimum Version    pip extra       Notes
 ============================================== ================== =============== =======================================
-`SciPy <https://github.com/scipy/scipy>`__     1.10.0             computation     Miscellaneous statistical functions
-`xarray <https://github.com/pydata/xarray>`__  2022.12.0          computation     pandas-like API for N-dimensional data
+`SciPy <https://github.com/scipy/scipy>`__     1.12.0             computation     Miscellaneous statistical functions
+`xarray <https://github.com/pydata/xarray>`__  2024.1.1           computation     pandas-like API for N-dimensional data
 ============================================== ================== =============== =======================================
 
 .. _install.excel_dependencies:
@@ -224,8 +224,8 @@ Installable with ``pip install "pandas[excel]"``.
 Dependency                                                         Minimum Version    pip extra       Notes
 ================================================================== ================== =============== =============================================================
 `xlrd <https://github.com/python-excel/xlrd>`__                    2.0.1              excel           Reading for xls files
-`xlsxwriter <https://github.com/jmcnamara/XlsxWriter>`__           3.0.5              excel           Writing for xlsx files
-`openpyxl <https://github.com/theorchard/openpyxl>`__              3.1.0              excel           Reading / writing for Excel 2010 xlsx/xlsm/xltx/xltm files
+`xlsxwriter <https://github.com/jmcnamara/XlsxWriter>`__           3.2.0              excel           Writing for xlsx files
+`openpyxl <https://github.com/theorchard/openpyxl>`__              3.1.2              excel           Reading / writing for Excel 2010 xlsx/xlsm/xltx/xltm files
 `pyxlsb <https://github.com/willtrnr/pyxlsb>`__                    1.0.10             excel           Reading for xlsb files
 `python-calamine <https://github.com/dimastbk/python-calamine>`__  0.1.7              excel           Reading for xls/xlsx/xlsm/xlsb/xla/xlam/ods files
 `odfpy <https://github.com/eea/odfpy>`__                           1.4.1              excel           Reading / writing for OpenDocument 1.2 files
@@ -239,7 +239,7 @@ Installable with ``pip install "pandas[html]"``.
 =============================================================== ================== =============== ==========================
 Dependency                                                      Minimum Version    pip extra       Notes
 =============================================================== ================== =============== ==========================
-`BeautifulSoup4 <https://github.com/wention/BeautifulSoup4>`__  4.11.2             html            HTML parser for read_html
+`BeautifulSoup4 <https://github.com/wention/BeautifulSoup4>`__  4.12.3             html            HTML parser for read_html
 `html5lib <https://github.com/html5lib/html5lib-python>`__      1.1                html            HTML parser for read_html
 `lxml <https://github.com/lxml/lxml>`__                         4.9.2              html            HTML parser for read_html
 =============================================================== ================== =============== ==========================
@@ -291,7 +291,7 @@ Dependency                                                         Minimum Versi
                                                                                       mysql,
                                                                                       sql-other
 `psycopg2 <https://github.com/psycopg/psycopg2>`__                 2.9.6              postgresql      PostgreSQL engine for sqlalchemy
-`pymysql <https://github.com/PyMySQL/PyMySQL>`__                   1.0.2              mysql           MySQL engine for sqlalchemy
+`pymysql <https://github.com/PyMySQL/PyMySQL>`__                   1.1.0              mysql           MySQL engine for sqlalchemy
 `adbc-driver-postgresql <https://github.com/apache/arrow-adbc>`__  0.10.0             postgresql      ADBC Driver for PostgreSQL
 `adbc-driver-sqlite <https://github.com/apache/arrow-adbc>`__      0.8.0              sql-other       ADBC Driver for SQLite
 ================================================================== ================== =============== ============================================
@@ -307,9 +307,9 @@ Dependency                                             Minimum Version    pip ex
 `PyTables <https://github.com/PyTables/PyTables>`__    3.8.0              hdf5             HDF5-based reading / writing
 `blosc <https://github.com/Blosc/c-blosc>`__           1.21.3             hdf5             Compression for HDF5; only available on ``conda``
 `zlib <https://github.com/madler/zlib>`__                                 hdf5             Compression for HDF5
-`fastparquet <https://github.com/dask/fastparquet>`__  2023.10.0          -                Parquet reading / writing (pyarrow is default)
+`fastparquet <https://github.com/dask/fastparquet>`__  2024.2.0           -                Parquet reading / writing (pyarrow is default)
 `pyarrow <https://github.com/apache/arrow>`__          10.0.1             parquet, feather Parquet, ORC, and feather reading / writing
-`pyreadstat <https://github.com/Roche/pyreadstat>`__   1.2.0              spss             SPSS files (.sav) reading
+`pyreadstat <https://github.com/Roche/pyreadstat>`__   1.2.6              spss             SPSS files (.sav) reading
 `odfpy <https://github.com/eea/odfpy>`__               1.4.1              excel            Open document format (.odf, .ods, .odt) reading / writing
 ====================================================== ================== ================ ==========================================================
 
@@ -329,10 +329,10 @@ Installable with ``pip install "pandas[fss, aws, gcp]"``
 ============================================ ================== =============== ==========================================================
 Dependency                                   Minimum Version    pip extra       Notes
 ============================================ ================== =============== ==========================================================
-`fsspec <https://github.com/fsspec>`__       2022.11.0          fss, gcp, aws   Handling files aside from simple local and HTTP (required
+`fsspec <https://github.com/fsspec>`__       2024.2.0           fss, gcp, aws   Handling files aside from simple local and HTTP (required
                                                                                 dependency of s3fs, gcsfs).
-`gcsfs <https://github.com/fsspec/gcsfs>`__  2022.11.0          gcp             Google Cloud Storage access
-`s3fs <https://github.com/fsspec/s3fs>`__    2022.11.0          aws             Amazon S3 access
+`gcsfs <https://github.com/fsspec/gcsfs>`__  2024.2.0           gcp             Google Cloud Storage access
+`s3fs <https://github.com/fsspec/s3fs>`__    2024.2.0           aws             Amazon S3 access
 ============================================ ================== =============== ==========================================================
 
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