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Prepare for docs-assembler (#792)
Restructure content and create `toc.yml` files needed by docs-assembler. ![image](https://github.com/user-attachments/assets/47f6bc05-5c24-4516-8079-e035682b1e7e) cc @Mpdreamz
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deploy-manage/cloud-organization/tools-and-apis.md

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* [APM event intake API Reference](/solutions/observability/apps/elastic-apm-events-intake-api.md)
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* [App Search API Reference](https://www.elastic.co/guide/en/app-search/current/api-reference.html)
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* [Elastic Security APIs](https://www.elastic.co/guide/en/security/current/security-apis.html)
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* [Fleet APIs](/reference/ingestion-tools/fleet/fleet-api-docs.md)
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* [Fleet APIs](/reference/fleet/fleet-api-docs.md)
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* [Logstash APIs](https://www.elastic.co/guide/en/logstash/current/monitoring-logstash.html)
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* [Workplace Search API Reference](https://www.elastic.co/guide/en/workplace-search/current/workplace-search-api-overview.html)
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deploy-manage/deploy.md

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This section focuses on deploying and managing {{es}} and {{kib}}, as well as supporting orchestration technologies. However, depending on your use case, you might need to deploy [other {{stack}} components](/get-started/the-stack.md). For example, you might need to add components to ingest logs or metrics.
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To learn how to deploy optional {{stack}} components, refer to the following sections:
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* [Fleet and Elastic Agent](/reference/ingestion-tools/fleet/index.md)
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* [Fleet and Elastic Agent](/reference/fleet/index.md)
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* [APM](/solutions/observability/apps/application-performance-monitoring-apm.md)
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* [Beats](beats://reference/index.md)
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* [Logstash](logstash://reference/index.md)

deploy-manage/deploy/_snippets/installation-order.md

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* {{es}}
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* {{kib}}
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* [Logstash](logstash://reference/index.md)
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* [{{agent}}](/reference/ingestion-tools/fleet/index.md) or [Beats](beats://reference/index.md)
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* [{{agent}}](/reference/fleet/index.md) or [Beats](beats://reference/index.md)
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* [APM](/solutions/observability/apps/application-performance-monitoring-apm.md)
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* [Elasticsearch Hadoop](elasticsearch-hadoop://reference/index.md)
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deploy-manage/deploy/cloud-enterprise/air-gapped-install.md

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* Follow the same prerequisites described in [](./install.md#ece-install-prerequisites). This includes [](./identify-deployment-scenario.md) and [](./prepare-environment.md) steps.
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* [Configure your operating system](./configure-operating-system.md) in all ECE hosts.
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* Be part of the `docker` group to run the installation script. You should not install Elastic Cloud Enterprise as the `root` user.
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* Set up and run a local copy of the Elastic Package Repository, otherwise your deployments with APM server and Elastic agent won’t work. Refer to the [Running EPR in air-gapped environments](/reference/ingestion-tools/fleet/air-gapped.md#air-gapped-diy-epr) documentation.
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* Set up and run a local copy of the Elastic Package Repository, otherwise your deployments with APM server and Elastic agent won’t work. Refer to the [Running EPR in air-gapped environments](/reference/fleet/air-gapped.md#air-gapped-diy-epr) documentation.
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When you are ready to install ECE, you can proceed:
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deploy-manage/deploy/cloud-enterprise/edit-stack-settings-apm.md

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Pick one of the following options:
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1. Upload and configure a publicly signed {{es}} TLS certificates. Check [Encrypt traffic in clusters with a self-managed Fleet Server](/reference/ingestion-tools/fleet/secure-connections.md) for details.
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1. Upload and configure a publicly signed {{es}} TLS certificates. Check [Encrypt traffic in clusters with a self-managed Fleet Server](/reference/fleet/secure-connections.md) for details.
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2. Change the {{es}} hosts where {{agent}}s send data from the default public URL, to the internal URL. In {{kib}}, navigate to **Fleet** and select the **Elastic Cloud agent policy**. Click **Fleet settings** and update the {{es}} hosts URL. For example, if the current URL is `https://123abc.us-central1.gcp.foundit.no:9244`, change it to `http://123abc.containerhost:9244`.
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deploy-manage/deploy/cloud-enterprise/manage-integrations-server.md

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# Manage your Integrations Server [ece-manage-integrations-server]
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For deployments that are version 8.0 and later, you have the option to add a combined [Application Performance Monitoring (APM) Server](/solutions/observability/apps/application-performance-monitoring-apm.md) and [Fleet Server](/reference/ingestion-tools/fleet/index.md) to your deployment. APM allows you to monitor software services and applications in real time, turning that data into documents stored in the Elasticsearch cluster. Fleet allows you to centrally manage Elastic Agents on many hosts.
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For deployments that are version 8.0 and later, you have the option to add a combined [Application Performance Monitoring (APM) Server](/solutions/observability/apps/application-performance-monitoring-apm.md) and [Fleet Server](/reference/fleet/index.md) to your deployment. APM allows you to monitor software services and applications in real time, turning that data into documents stored in the Elasticsearch cluster. Fleet allows you to centrally manage Elastic Agents on many hosts.
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As part of provisioning, the APM Server and Fleet Server are already configured to work with Elasticsearch and Kibana. At the end of provisioning, you are shown the secret token to configure communication between the APM Server and the backend [APM Agents](https://www.elastic.co/guide/en/apm/agent/index.html). The APM Agents get deployed within your services and applications.
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deploy-manage/deploy/cloud-on-k8s/configuration-examples-standalone.md

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# Configuration examples [k8s-elastic-agent-configuration-examples]
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This section contains manifests that illustrate common use cases, and can be your starting point in exploring Elastic Agent deployed with ECK. These manifests are self-contained and work out-of-the-box on any non-secured Kubernetes cluster. They all contain a three-node Elasticsearch cluster and a single Kibana instance. Add the corresponding integration package to Kibana to install the dashboards, visualizations and other assets for each of these examples as described in [the Elastic Agent documentation](/reference/ingestion-tools/fleet/install-elastic-agents.md).
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This section contains manifests that illustrate common use cases, and can be your starting point in exploring Elastic Agent deployed with ECK. These manifests are self-contained and work out-of-the-box on any non-secured Kubernetes cluster. They all contain a three-node Elasticsearch cluster and a single Kibana instance. Add the corresponding integration package to Kibana to install the dashboards, visualizations and other assets for each of these examples as described in [the Elastic Agent documentation](/reference/fleet/install-elastic-agents.md).
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::::{warning}
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The examples in this section are for illustration purposes only and should not be considered to be production-ready. Some of these examples use the `node.store.allow_mmap: false` setting which has performance implications and should be tuned for production workloads, as described in [Virtual memory](virtual-memory.md).

deploy-manage/deploy/cloud-on-k8s/configuration-fleet.md

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{{fleet}}-managed {{agents}} must connect to {{fleet-server}} to receive their configurations. You can deploy {{fleet-server}} instances using ECKs Agent CRD with the appropriate configuration, as shown in [Fleet mode and Fleet Server](#k8s-elastic-agent-fleet-configuration-fleet-mode-and-fleet-server).
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To know more about {{fleet}} architecture and related components, check the {{fleet}} [documentation](/reference/ingestion-tools/fleet/fleet-server.md).
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To know more about {{fleet}} architecture and related components, check the {{fleet}} [documentation](/reference/fleet/fleet-server.md).
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## {{fleet}} mode and {{fleet-server}} [k8s-elastic-agent-fleet-configuration-fleet-mode-and-fleet-server]
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Please note that the environment variables related to policy selection mentioned in the {{agent}} [docs](/reference/ingestion-tools/fleet/agent-environment-variables.md) like `FLEET_SERVER_POLICY_ID` will be managed by the ECK operator.
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Please note that the environment variables related to policy selection mentioned in the {{agent}} [docs](/reference/fleet/agent-environment-variables.md) like `FLEET_SERVER_POLICY_ID` will be managed by the ECK operator.
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## Running as a non-root user [k8s-elastic-agent-running-as-a-non-root-user]

deploy-manage/deploy/cloud-on-k8s/configuration-standalone.md

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```
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You can use the Fleet application in Kibana to generate the configuration for Elastic Agent, even when running in standalone mode. Check the [Elastic Agent standalone](/reference/ingestion-tools/fleet/install-standalone-elastic-agent.md) documentation. Adding the corresponding integration package to Kibana also adds the related dashboards and visualizations.
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You can use the Fleet application in Kibana to generate the configuration for Elastic Agent, even when running in standalone mode. Check the [Elastic Agent standalone](/reference/fleet/install-standalone-elastic-agent.md) documentation. Adding the corresponding integration package to Kibana also adds the related dashboards and visualizations.
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## Use multiple Elastic Agent outputs [k8s-elastic-agent-multi-output]

deploy-manage/deploy/cloud-on-k8s/fleet-managed-elastic-agent.md

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# Fleet-managed Elastic Agent [k8s-elastic-agent-fleet]
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This section describes how to configure and deploy {{agent}} in [{{fleet}}-managed](/reference/ingestion-tools/fleet/install-elastic-agents.md) mode with ECK. Check the [Standalone section](standalone-elastic-agent.md) if you want to run {{agent}} in the [standalone mode](/reference/ingestion-tools/fleet/install-standalone-elastic-agent.md).
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This section describes how to configure and deploy {{agent}} in [{{fleet}}-managed](/reference/fleet/install-elastic-agents.md) mode with ECK. Check the [Standalone section](standalone-elastic-agent.md) if you want to run {{agent}} in the [standalone mode](/reference/fleet/install-standalone-elastic-agent.md).
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* [Quickstart](quickstart-fleet.md)
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* [Configuration](configuration-fleet.md)

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