diff --git a/NOTICE.txt b/NOTICE.txt
index 611d1e00f3..c874ff9262 100644
--- a/NOTICE.txt
+++ b/NOTICE.txt
@@ -872,11 +872,11 @@ Contents of probable licence file $GOMODCACHE/github.com/elastic/elastic-agent-l
 
 --------------------------------------------------------------------------------
 Dependency : github.com/elastic/elastic-agent-system-metrics
-Version: v0.11.15
+Version: v0.13.3
 Licence type (autodetected): Apache-2.0
 --------------------------------------------------------------------------------
 
-Contents of probable licence file $GOMODCACHE/github.com/elastic/elastic-agent-system-metrics@v0.11.15/LICENSE.txt:
+Contents of probable licence file $GOMODCACHE/github.com/elastic/elastic-agent-system-metrics@v0.13.3/LICENSE.txt:
 
                                  Apache License
                            Version 2.0, January 2004
diff --git a/go.mod b/go.mod
index bfa6a79994..213833737b 100644
--- a/go.mod
+++ b/go.mod
@@ -9,7 +9,7 @@ require (
 	github.com/docker/go-units v0.5.0
 	github.com/elastic/elastic-agent-client/v7 v7.17.2
 	github.com/elastic/elastic-agent-libs v0.24.1
-	github.com/elastic/elastic-agent-system-metrics v0.11.15
+	github.com/elastic/elastic-agent-system-metrics v0.13.3
 	github.com/elastic/go-elasticsearch/v8 v8.18.1
 	github.com/elastic/go-ucfg v0.8.8
 	github.com/fxamacker/cbor/v2 v2.8.0
diff --git a/go.sum b/go.sum
index ae31254f82..23de6b2a82 100644
--- a/go.sum
+++ b/go.sum
@@ -37,8 +37,8 @@ github.com/elastic/elastic-agent-client/v7 v7.17.2 h1:Cl2TeABqWZgW40t5fchGWT/sRk
 github.com/elastic/elastic-agent-client/v7 v7.17.2/go.mod h1:5irRFqp6HLqtu1S+OeY0jg8x7K6PLL+DW+PwVk1vJnk=
 github.com/elastic/elastic-agent-libs v0.24.1 h1:kFPpOG5mbdaGRRNXPb2KfEaR65Uoi8nsMbDOKA02/Go=
 github.com/elastic/elastic-agent-libs v0.24.1/go.mod h1:o/iXtbHYaojpG4BOY7Z3hFMQAgEoqq2owO17JPGpf3A=
-github.com/elastic/elastic-agent-system-metrics v0.11.15 h1:RWX0n6LakadsqB6YB2I7AIXyMlEO4qBUGWn4A+aGeKA=
-github.com/elastic/elastic-agent-system-metrics v0.11.15/go.mod h1:qiZC5p1hd8te4XVnhh7FkXdcYhxFnl5i9GJpROtf6zo=
+github.com/elastic/elastic-agent-system-metrics v0.13.3 h1:VlY3Ezuwi5bPZRsAM97WaJEW78XkXgqmPHcTl1WGMRw=
+github.com/elastic/elastic-agent-system-metrics v0.13.3/go.mod h1:lB8veYWYBlA9eF6TahmPN87G1IEgWlbep7QSqLSW90U=
 github.com/elastic/elastic-transport-go/v8 v8.7.0 h1:OgTneVuXP2uip4BA658Xi6Hfw+PeIOod2rY3GVMGoVE=
 github.com/elastic/elastic-transport-go/v8 v8.7.0/go.mod h1:YLHer5cj0csTzNFXoNQ8qhtGY1GTvSqPnKWKaqQE3Hk=
 github.com/elastic/go-elasticsearch/v8 v8.18.1 h1:lPsN2Wk6+QqBeD4ckmOax7G/Y8tAZgroDYG8j6/5Ce0=
diff --git a/internal/pkg/api/metrics.go b/internal/pkg/api/metrics.go
index 7e4c6f096d..371879dfbf 100644
--- a/internal/pkg/api/metrics.go
+++ b/internal/pkg/api/metrics.go
@@ -55,10 +55,6 @@ var (
 // metrics must be explicitly exposed with a call to InitMetrics
 // FIXME we have global metrics but an internal and external API; this may lead to some confusion.
 func init() {
-	err := report.SetupMetrics(logger.NewZapStub("instance-metrics"), build.ServiceName, version.DefaultVersion)
-	if err != nil {
-		zerolog.Ctx(context.TODO()).Error().Err(err).Msg("unable to initialize metrics") // TODO is used because this may logged during the package load
-	}
 
 	registry = newMetricsRegistry("http_server")
 	cntHTTPNew = newCounter(registry, "tcp_open")
@@ -78,6 +74,17 @@ func init() {
 	cntFileDeliv.Register(routesRegistry.newRegistry("deliverFile"))
 	cntGetPGP.Register(routesRegistry.newRegistry("getPGPKey"))
 	cntAuditUnenroll.Register(routesRegistry.newRegistry("auditUnenroll"))
+
+	err := report.SetupMetricsOptions(report.MetricOptions{
+		Logger:         logger.NewZapStub("instance-metrics"),
+		Name:           build.ServiceName,
+		Version:        version.DefaultVersion,
+		SystemMetrics:  monitoring.NewRegistry(),
+		ProcessMetrics: registry.registry,
+	})
+	if err != nil {
+		zerolog.Ctx(context.TODO()).Error().Err(err).Msg("unable to initialize metrics") // TODO is used because this may logged during the package load
+	}
 }
 
 // metricsRegistry wraps libbeat and prometheus registries
@@ -91,7 +98,7 @@ func newMetricsRegistry(name string) *metricsRegistry {
 	reg := monitoring.Default
 	return &metricsRegistry{
 		fullName: name,
-		registry: reg.NewRegistry(name),
+		registry: reg.GetOrCreateRegistry(name),
 		promReg:  prometheus.NewRegistry(),
 	}
 }
@@ -103,7 +110,7 @@ func (r *metricsRegistry) newRegistry(name string) *metricsRegistry {
 	}
 	return &metricsRegistry{
 		fullName: fullName,
-		registry: r.registry.NewRegistry(name),
+		registry: r.registry.GetOrCreateRegistry(name),
 		promReg:  r.promReg,
 	}
 }