Merge pull request ResearchObject#480 from ResearchObject/outreach-elixir-ahm2025

Add Outreach ELIXIR AHM 2025

Author: stain

docs/pages/community/outreach.md

@@ -46,19 +46,48 @@ _Data Science_ **5**(2)
 
 ### 2025
 
+ELIXIR (2025):  
+[**ELIXIR Annual Report 2024**](https://doi.org/10.7490/f1000research.1120222.1).  
+_F1000Research_ **14**(ELIXIR):613  
+<https://doi.org/10.7490/f1000research.1120222.1>
+
+Tereza Manousaki, Cyril Pommier, Robert Waterhouse, Katharina F. Heil1, Physilia Chua, Uwe Scholz, Aristotelis Papageorgiou, Flora D’Anna, Daniel Arend, Alessandro Cestaro, Auke Damstra, Kristina Gruden, Bérénice Batut (2025):  
+[**Biodiversity food security and pathogens mini symposium**](https://doi.org/10.7490/f1000research.1120214.1).  
+ELIXIR All Hands Meeting ([AHM2025](https://elixir-europe.org/events/elixir-all-hands-2025)), Thessaloniki, Greece,  2025-06-02/--05.  
+_F1000Research_ **14**(ELIXIR):590  
+<https://doi.org/10.7490/f1000research.1120214.1>
+
+Eli Chadwick, Stian Soiland-Reyes, José María Fernández, Björn Grüning, Carole Goble (2025):  
+[**RO-Crate** – Capturing FAIR research outputs throughout the ELIXIR landscape](https://doi.org/10.7490/f1000research.1120199.1).  
+ELIXIR All Hands Meeting ([AHM2025](https://elixir-europe.org/events/elixir-all-hands-2025)), Thessaloniki, Greece,  2025-06-02/--05.  
+_F1000Research_ **14**(ELIXIR):543 (poster)  
+<https://doi.org/10.7490/f1000research.1120199.1>
+
+Paula Iborra, José M. Fernández, Laia Codó, Eugenio Gonzalo, Stian Soiland-Reyes, Alexander Hambley, Jonathan Couldridge, Carole Goble, Philip Quinlan, Salvador Capella-Gutierrez (2025):  
+[**ENTRUSTing WfExS 1.0 with WES and TES**](https://doi.org/10.7490/f1000research.1120178.1).  
+ELIXIR All Hands Meeting ([AHM2025](https://elixir-europe.org/events/elixir-all-hands-2025)), Thessaloniki, Greece,  2025-06-02/--05.  
+_F1000Research_ **14**(ELIXIR):518 (poster)  
+<https://doi.org/10.7490/f1000research.1120178.1>
+
+Stuart Owen, Munazah Andrabi, Finn Bacall, Phil Reed, Xiaoming Hu, Ulrike Wittig1, Maja Rey, Martin Golebiewski, Flora D'Anna, Kevin De Pelseneer, Jacky Snoep, Wolfgang Müller, Carole Goble (2025):  
+[**FAIRDOM-SEEK** – Platform for FAIR data and research outcome management](https://doi.org/10.7490/f1000research.1120207.1).  
+ELIXIR All Hands Meeting ([AHM2025](https://elixir-europe.org/events/elixir-all-hands-2025)), Thessaloniki, Greece,  2025-06-02/--05.  
+_F1000Research_ **14**(ELIXIR):558 (poster)  
+<https://doi.org/10.7490/f1000research.1120207.1>
+
 Sean Wilkinson, Meznah Aloqalaa, Khalid Belhajjame, Michael R. Crusoe, Bruno de Paula Kinoshita, Luiz Gadelha, Daniel Garijo, Ove Johan Ragnar Gustafsson, Nick Juty, Sehrish Kanwal, Farah Zaib Khan, Johannes Köster, Karsten Peters-von Gehlen, Line Pouchard, Randy K. Rannow, Stian Soiland-Reyes, Nicola Soranzo, Shoaib Sufi, Ziheng Sun, Baiba Vilne, Merridee A. Wouters, Denis Yuen, Carole Goble (2025):  
-**Applying the FAIR Principles to Computational Workflows**.  
+[**Applying the FAIR Principles to Computational Workflows**](https://doi.org/10.1038/s41597-025-04451-9).  
 _Scientific Data_ **12**:328
 <https://doi.org/10.1038/s41597-025-04451-9>
 
 Sean R. Wilkinson, Johan Gustafsson, Finn Bacall, Khalid Belhajjame, Salvador Capella, Jose Maria Fernandez Gonzalez, Jacob Fosso Tande, Luiz Gadelha, Daniel Garijo, Patricia Grubel, Bjorn Grüning, Farah Zaib Khan, Sehrish Kanwal, Simone Leo, Stuart Owen, Luca Pireddu, Line Pouchard, Laura Rodríguez-Navas, Beatriz Serrano-Solano, Stian Soiland-Reyes, Baiba Vilne, Alan Williams, Merridee Ann Wouters, Frederik Coppens, Carole Goble (2025):  
-**An Ecosystem of Services for FAIR Computational Workflows**.  
+[**An Ecosystem of Services for FAIR Computational Workflows**](https://doi.org/10.48550/arXiv.2505.15988).  
 Book chapter, draft  
 _arXiv_ 2505.15988 [cs.DC]
 <https://doi.org/10.48550/arXiv.2505.15988>
 
 Ove Johan Ragnar Gustafsson, Sean R. Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo, Luca Pireddu, Stuart Owen, Nick Juty, José Mª Fernández, Tom Brown, Hervé Ménager, Björn Grüning, Salvador Capella-Gutierrez, Frederik Coppens, Carole Goble (2025):  
-**WorkflowHub**: a registry for computational workflows.  
+[**WorkflowHub**: a registry for computational workflows](https://doi.org/10.1038/s41597-025-04786-3).  
 _Scientific Data_ **12**:837  
 <https://doi.org/10.1038/s41597-025-04786-3>
 
@@ -79,18 +108,6 @@ Eric Hauser, Kilian Warmuth, Marcel Kempf, Stefan Lachnit, Georg Carle (2025):
 [**MARTE: Malleable and Automated Reproduction for Testbed-driven Experiments**](https://www.net.in.tum.de/fileadmin/bibtex/publications/papers/hauser_rep2025.pdf).  
 _2025 ACM Conference on Reproducibility and Replicability_ (in print)  
 
-Stian Soiland-Reyes, Stuart Wheater, Thomas Giles, Jonathan Couldridge, Phil Quinlan, Carole Goble (2025):  
-**Five Safes RO-Crate**: FAIR Digital Objects for Trusted Research Environments.  
-_International FAIR Digital Objects Implementation Summit 2024_, Berlin, Germany, 2024-03-20/–21.  
-_Open Conference Proceedings_ **5*  
-<https://doi.org/10.52825/ocp.v5i.1419>
-
-Bruno de Paula Kinoshita, Edgar Garriga Nogales, Manuel Giménez de Castro Marciani,  Miguel Castrillo Melguizo (2025):  
-**FAIR Digital Objects in Autosubmit Workflows**.  
-_International FAIR Digital Objects Implementation Summit 2024_, Berlin, Germany, 2024-03-20/–21.  
-_Open Conference Proceedings_ **5*  
-<https://doi.org/10.52825/ocp.v5i.1416>
-
 Eli Chadwick, Stian Soiland-Reyes, Phil Reed (2025):  
 [**RO-Crate: Capturing FAIR research outputs in bioinformatics and beyond**](https://doi.org/10.5281/zenodo.15849770).  
 (poster, flash talk)  
@@ -104,6 +121,18 @@ _DARE TREvolution_ webinar
 <https://doi.org/10.5281/zenodo.15641886>
 [[video](https://youtu.be/7XSQKJOpZ20)]
 
+Stian Soiland-Reyes, Stuart Wheater, Thomas Giles, Jonathan Couldridge, Phil Quinlan, Carole Goble (2025):  
+[**Five Safes RO-Crate**: FAIR Digital Objects for Trusted Research Environments](https://doi.org/10.52825/ocp.v5i.1419).  
+_International FAIR Digital Objects Implementation Summit 2024_ ([FDO2024](https://fairdo.org/fdof-summit-2024/)), Berlin, Germany, 2024-03-20/--21.  
+_Open Conference Proceedings_ **5**  
+<https://doi.org/10.52825/ocp.v5i.1419>
+
+Bruno de Paula Kinoshita, Edgar Garriga Nogales, Manuel Giménez de Castro Marciani,  Miguel Castrillo Melguizo (2025):  
+[**FAIR Digital Objects in Autosubmit Workflows**](https://doi.org/10.52825/ocp.v5i.1416).  
+_International FAIR Digital Objects Implementation Summit 2024_ ([FDO2024](https://fairdo.org/fdof-summit-2024/)), Berlin, Germany, 2024-03-20/--21.  
+_Open Conference Proceedings_ **5**  
+<https://doi.org/10.52825/ocp.v5i.1416>
+
 Jonas Grieb, Claus Weiland, Alexander Wolodkin, Julian Lopez Gordillo, Sharif Islam (2025):  
 [**Implementing FAIR Semantic Mappings Leveraging on RO-Crate**](https://doi.org/10.52825/ocp.v5i.1179)  
 _International FAIR Digital Objects Implementation Summit 2024_ ([FDO2024](https://fairdo.org/fdof-summit-2024/)), Berlin, Germany, 2024-03-20/--21.  
@@ -168,17 +197,17 @@ _BioHackrXiv_
 <https://doi.org/10.37044/osf.io/3x274>
 
 Markus Konkol, Astra Labuce, Sami Domisch, Merret Buurman, Vanessa Bremerich (2025):  
-**Encouraging reusability of computational research through Data-to-Knowledge Packages** - A hydrological use case.  
+[**Encouraging reusability of computational research through Data-to-Knowledge Packages** - A hydrological use case](https://doi.org/10.12688/openreseurope.20221.2).  
 _Open Research Europe_  
 <https://doi.org/10.12688/openreseurope.20221.2>
 
 Manuel Feser, Sebastian Beyvers, Daniel Arend, Constantin Breß, Maria Hansen, Christian Henke, Stephan Lesch, Carmen Scheuner, Heinrich Lukas Weil (2025):  
-**Simplifying and Standardizing the Creation of Data Use Agreements for Life Sciences and Beyond** - BH Germany2024.  
+[**Simplifying and Standardizing the Creation of Data Use Agreements for Life Sciences and Beyond**](https://doi.org/10.37044/osf.io/83apv_v1) - BH Germany2024.  
 _BioHackrXiv_  
 <https://doi.org/10.37044/osf.io/83apv_v1>
 
 Vladimir Korolev, Anupam Joshi (2025):  
-**Crystalia**: Flexible and Efficient Method for Large Dataset Lineage Tracking.  
+[**Crystalia**: Flexible and Efficient Method for Large Dataset Lineage Tracking](https://doi.org/10.1109/BigData62323.2024.10826067).  
 _2024 IEEE International Conference on Big Data (BigData)_  
 <https://doi.org/10.1109/BigData62323.2024.10826067>
 
@@ -193,11 +222,6 @@ Christopher Kelly, Wei Xu, Line C Pouchard, Hubertus Van Dam, Tanzima Z Islam, S
 _The International Journal of High Performance Computing Applications_ **39**(4)  
 <https://doi.org/10.1177/10943420251316253>
 
-Paula Iborra, José M. Fernández, Laia Codo, Eugenio Gonzalo, Alexander Hambley, Stian Soiland-Reyes, Jonathan Couldridge, Carole Goble, Philip Quinlan, Salvador Capella-Gutierrez (2025):  
-**ENTRUSTing WfExS 1.0 with WES and TES**.  (Poster)  
-_ELIXIR All Hands Meeting_ 2025  
-<https://doi.org/10.7490/f1000research.1120178.1>
-
 
 Irene Celino, Mario Scrocca, Agnese Chiatti (2025):  
 **Mutual Understanding between People and Systems via Neurosymbolic AI and Knowledge Graphs**.  
@@ -206,20 +230,26 @@ _Frontiers in Artificial Intelligence and Applications_ **400**
 <https://doi.org/10.3233/FAIA250241>  [[arXiv:2504.11200](https://doi.org/10.48550/arXiv.2504.11200)]
 
 Gabriele Padovani, Valentine Anantharaj, Sandro Fiore (2025):  
-**Provenance Tracking in Large-Scale Machine Learning Systems**.  
+[**Provenance Tracking in Large-Scale Machine Learning Systems**](https://doi.org/10.48550/arXiv.2507.01075).  
 _arXiv_:2507.01075 [cs.LG]  
 <https://doi.org/10.48550/arXiv.2507.01075>
 
 Chris Card, Rachel Heaven, Andrew Kingdon, Patrick Bell, Alex Baldwin, Jeremy Carter, Jonathan Coney, Jonathan Cooper, Itahisa Gonzalez Alvarez, Michael Hollaway, 
 Matthew McCormack, David Poulter, Ag Stephens, Philip Trembath (2025):  
-**Publishing Environmental Data APIs for use in AI workflows**:
-recommendations and demonstrators of a standard approach within the NERC Environmental Data Service.  
+[**Publishing Environmental Data APIs for use in AI workflows**:
+recommendations and demonstrators of a standard approach within the NERC Environmental Data Service](https://nora.nerc.ac.uk/id/eprint/539708).  
 _NERC Open Research Archive_ OR/25/045  
 <https://nora.nerc.ac.uk/id/eprint/539708>
 
 
 ### 2024
 
+Eugenio Gonzalo, Laia Codó, Jose María Fernandez, Stian Soiland-Reyes, Salvador Capella-Gutierrez, Emily Jefferson, Carole Goble, Tim Beck, Phil Quinlan, Tom Giles (2024):  
+[**Five safes workflow RO-Crate and WfExS**. Closing the gap of federated analysis and Trusted Research Enviroments (TREs) in the health data context](https://doi.org/10.7490/f1000research.1119724.1).  
+ELIXIR All Hands Meeting ([AHM2024](https://elixir-europe.org/events/elixir-all-hands-2024)), Uppsala, Sweden, 2024-06-10/--12.    
+_F1000Research_ **13**(ELIXIR):550 (poster) 
+<https://doi.org/10.7490/f1000research.1119724.1>
+
 Peter Sefton, Amanda Harris, Nick Thieberger (2024):  
 **A new archival data structure**: PARADISEC's move to RO-Crate.  
 _Language Documentation and Archiving Conference_, Berlin & Online, 4-6 Sept, 2024