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Prerequisites

To prepare the environment on Mac before downloading the Python packages, you might need to install the following:

brew install pkg-config icu4c

Then, add this to the PATH in the file ~/.zshrc using the command below:

export PATH="/usr/local/opt/icu4c/bin:$PATH"

Running Pipelines via Virtual Environment

To run pipelines via a virtual environment make sure the virtual environment is created and dev dependencies are installed:

make dev-venv

To update:

make dev-install

Some environment variables can be set to be able to run the pipelines with real data:

DATA_SCIENCE_SOURCE_DATASET=my_dev
DATA_SCIENCE_OUTPUT_DATASET=my_dev

PeerScout Build Senior Editor Profiles via Virtual Environment

make dev-run-peerscout-build-senior-editor-profiles

Running Pipelines via Docker

To run pipelines via docker, the non-dev image need to be built first via:

make build

Some environment variables can be set to be able to run the pipelines with real data:

DATA_SCIENCE_SOURCE_DATASET=my_dev
DATA_SCIENCE_OUTPUT_DATASET=my_dev

PeerScout Build Reviewing Editor Profiles via Docker

make data-science-pipelines-run-peerscout-build-reviewing-editor-profiles

This may take several minutes to run.

PeerScout Build Senior Editor Profiles via Docker

make data-science-pipelines-run-peerscout-build-senior-editor-profiles

This may take several minutes to run.

PeerScout Get Editor Pubmed Papers via Docker

make data-science-pipelines-run-peerscout-get-editor-pubmed-papers MAX_MANUSCRIPTS=10

This may take several minutes to run.

PeerScout Recommend Reviewing Editors via Docker

make data-science-pipelines-run-peerscout-recommend-reviewing-editors MAX_MANUSCRIPTS=10

PeerScout Recommend Senior Editors via Docker

make data-science-pipelines-run-peerscout-recommend-senior-editors MAX_MANUSCRIPTS=10

PeerScout API

For sample requests also see:

To test the api

make peerscout-api-start
curl \
    --request POST \
    --data '@peerscout_api/example-data/peerscout-api-request1.json' \
    http://localhost:8080/api/peerscout | jq .

to test empty abstract response:

curl \
    --request POST \
    --data '@peerscout_api/example-data/peerscout-api-request2.json' \
    http://localhost:8080/api/peerscout  | jq .

to test if the author not provide any suggestion or exclution to display 'Not Provided'.

curl \
    --request POST \
    --data '@peerscout_api/example-data/peerscout-api-request3.json' \
    http://localhost:8080/api/peerscout  | jq .