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Update tools table and page metadata (#1817)
Co-authored-by: bianchini88 <bianchini88@users.noreply.github.com>
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_data/tool_and_resource_list.yml

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url: http://www.biomedicale.parisdescartes.fr/aop4EUpest/home.php
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- description: APID (Agile Protein Interactomes DataServer) is a server that provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs)
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id: apid-interactomes
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name: Agile Protein Interactomes Dataserver (APID Interactomes)
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name: Agile Protein Interactomes Dataserver (APID Interactomes)
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registry:
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biotools: apid
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fairsharing: 8ye60e
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id: proteomics-standards-initiative
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name: The Human Proteome Organisation (HUPO) Proteomics Standards Initiative (PSI)
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registry:
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biotools: psi
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fairsharing: 9f60e7
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url: https://www.psidev.info/
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- description: A secure platform for developing and sharing reproducible methods.
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url: https://rri-tools.eu/self-reflection-tool
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- description: Information about a proposed standard for sample metadata annotations in public repositories called Sample and Data Relationship File (SDRF)-Proteomics format.
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id: sdrf
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name: Sample and Data Relationship Format for Proteomics (SDRF)
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name: Sample and Data Relationship Format for Proteomics (SDRF)
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registry:
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fairsharing: https://doi.org/10.25504/FAIRsharing.4a8cd2
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url: https://github.com/bigbio/proteomics-sample-metadata/tree/master/sdrf-proteomics
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url: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
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- description: A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.
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id: psi-mi
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name: PSI Molecular Interaction Controlled Vocabulary (PSI-MI CV)
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name: PSI Molecular Interaction Controlled Vocabulary (PSI-MI CV)
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registry:
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fairsharing: 8qzmtr
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url: http://www.psidev.info/groups/molecular-interactions
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- description: The XLMOD ontology is a structured, controlled vocabulary for cross-linking reagents and cross-linker-related post-translational modifications used in cross-linking mass spectrometry experiments and derivatisation reagents for GC-MS.
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id: xlmod
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name: HUPO-PSI cross-linking and derivatization reagents controlled vocabulary (XLMOD)
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name: HUPO-PSI cross-linking and derivatization reagents controlled vocabulary (XLMOD)
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registry:
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fairsharing: 6ccbe6
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url: https://github.com/HUPO-PSI/xlmod-CV
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- description: MIAPE defines the minimum set of information about whole proteomics experiments that would be required in a public repository.
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id: miape
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name: Minimum Information About a Proteomics Experiment (MIAPE)
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name: Minimum Information About a Proteomics Experiment (MIAPE)
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registry:
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fairsharing: 8vv5fc
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url: http://www.psidev.info/miape
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url: http://www.psidev.info/mzml
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- description: mzIdentML provides a common format for the export of identification results from any search engine.
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id: mzidentml
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name: mz peptide and protein Identification Markup Language (mzIdentML)
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name: mz peptide and protein Identification Markup Language (mzIdentML)
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registry:
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fairsharing: 11889
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url: https://www.psidev.info/mzidentml
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- description: This format aims to present the results of a proteomics experiment in a computationally accessible overview.
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id: mztab
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name: mzTab
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name: mzTab
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registry:
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fairsharing: c12tyk
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url: https://www.psidev.info/mztab-specifications
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- description: jPOSTrepo (Japan ProteOme STandard Repository) is a data repository for sharing MS raw/processed data.
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id: jpostrepo
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name: Japan Proteome Standard Repository (jPOSTrepo)
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registry:
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registry:
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fairsharing: p899f7
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url: https://repository.jpostdb.org/
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- description: iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments.
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id: iprox
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name: iProX
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registry:
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biotools: iprox
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fairsharing: 4Sj3vE
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url: https://www.iprox.org/
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- description: Panorama Public is a data repository for sharing and disseminating results from analysing mass spectrometry data with the Skyline software, supporting targeted analysis of proteomics or metabolomics data from a variety of mass spectrometry data acquisition techniques.
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id: panoramapublic
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name: Panorama Public
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registry:
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fairsharing: uBpQ1q
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url: https://panoramaweb.org/home/project-begin.view
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url: https://panoramaweb.org/home/project-begin.view

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