|
176 | 176 | url: http://www.biomedicale.parisdescartes.fr/aop4EUpest/home.php |
177 | 177 | - description: APID (Agile Protein Interactomes DataServer) is a server that provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs) |
178 | 178 | id: apid-interactomes |
179 | | - name: Agile Protein Interactomes Dataserver (APID Interactomes) |
| 179 | + name: Agile Protein Interactomes Dataserver (APID Interactomes) |
180 | 180 | registry: |
181 | 181 | biotools: apid |
182 | 182 | fairsharing: 8ye60e |
|
1685 | 1685 | id: proteomics-standards-initiative |
1686 | 1686 | name: The Human Proteome Organisation (HUPO) Proteomics Standards Initiative (PSI) |
1687 | 1687 | registry: |
| 1688 | + biotools: psi |
1688 | 1689 | fairsharing: 9f60e7 |
1689 | 1690 | url: https://www.psidev.info/ |
1690 | 1691 | - description: A secure platform for developing and sharing reproducible methods. |
|
2400 | 2401 | url: https://rri-tools.eu/self-reflection-tool |
2401 | 2402 | - description: Information about a proposed standard for sample metadata annotations in public repositories called Sample and Data Relationship File (SDRF)-Proteomics format. |
2402 | 2403 | id: sdrf |
2403 | | - name: Sample and Data Relationship Format for Proteomics (SDRF) |
| 2404 | + name: Sample and Data Relationship Format for Proteomics (SDRF) |
2404 | 2405 | registry: |
2405 | 2406 | fairsharing: https://doi.org/10.25504/FAIRsharing.4a8cd2 |
2406 | 2407 | url: https://github.com/bigbio/proteomics-sample-metadata/tree/master/sdrf-proteomics |
|
3488 | 3489 | url: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo |
3489 | 3490 | - description: A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. |
3490 | 3491 | id: psi-mi |
3491 | | - name: PSI Molecular Interaction Controlled Vocabulary (PSI-MI CV) |
| 3492 | + name: PSI Molecular Interaction Controlled Vocabulary (PSI-MI CV) |
3492 | 3493 | registry: |
3493 | 3494 | fairsharing: 8qzmtr |
3494 | 3495 | url: http://www.psidev.info/groups/molecular-interactions |
3495 | 3496 | - description: The XLMOD ontology is a structured, controlled vocabulary for cross-linking reagents and cross-linker-related post-translational modifications used in cross-linking mass spectrometry experiments and derivatisation reagents for GC-MS. |
3496 | 3497 | id: xlmod |
3497 | | - name: HUPO-PSI cross-linking and derivatization reagents controlled vocabulary (XLMOD) |
| 3498 | + name: HUPO-PSI cross-linking and derivatization reagents controlled vocabulary (XLMOD) |
3498 | 3499 | registry: |
3499 | 3500 | fairsharing: 6ccbe6 |
3500 | 3501 | url: https://github.com/HUPO-PSI/xlmod-CV |
3501 | 3502 | - description: MIAPE defines the minimum set of information about whole proteomics experiments that would be required in a public repository. |
3502 | 3503 | id: miape |
3503 | | - name: Minimum Information About a Proteomics Experiment (MIAPE) |
| 3504 | + name: Minimum Information About a Proteomics Experiment (MIAPE) |
3504 | 3505 | registry: |
3505 | 3506 | fairsharing: 8vv5fc |
3506 | 3507 | url: http://www.psidev.info/miape |
|
3512 | 3513 | url: http://www.psidev.info/mzml |
3513 | 3514 | - description: mzIdentML provides a common format for the export of identification results from any search engine. |
3514 | 3515 | id: mzidentml |
3515 | | - name: mz peptide and protein Identification Markup Language (mzIdentML) |
| 3516 | + name: mz peptide and protein Identification Markup Language (mzIdentML) |
3516 | 3517 | registry: |
3517 | 3518 | fairsharing: 11889 |
3518 | 3519 | url: https://www.psidev.info/mzidentml |
3519 | 3520 | - description: This format aims to present the results of a proteomics experiment in a computationally accessible overview. |
3520 | 3521 | id: mztab |
3521 | | - name: mzTab |
| 3522 | + name: mzTab |
3522 | 3523 | registry: |
3523 | 3524 | fairsharing: c12tyk |
3524 | 3525 | url: https://www.psidev.info/mztab-specifications |
3525 | 3526 | - description: jPOSTrepo (Japan ProteOme STandard Repository) is a data repository for sharing MS raw/processed data. |
3526 | 3527 | id: jpostrepo |
3527 | 3528 | name: Japan Proteome Standard Repository (jPOSTrepo) |
3528 | | - registry: |
| 3529 | + registry: |
3529 | 3530 | fairsharing: p899f7 |
3530 | 3531 | url: https://repository.jpostdb.org/ |
3531 | 3532 | - description: iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. |
3532 | 3533 | id: iprox |
3533 | 3534 | name: iProX |
3534 | 3535 | registry: |
| 3536 | + biotools: iprox |
3535 | 3537 | fairsharing: 4Sj3vE |
3536 | 3538 | url: https://www.iprox.org/ |
3537 | 3539 | - description: Panorama Public is a data repository for sharing and disseminating results from analysing mass spectrometry data with the Skyline software, supporting targeted analysis of proteomics or metabolomics data from a variety of mass spectrometry data acquisition techniques. |
3538 | 3540 | id: panoramapublic |
3539 | 3541 | name: Panorama Public |
3540 | 3542 | registry: |
3541 | 3543 | fairsharing: uBpQ1q |
3542 | | - url: https://panoramaweb.org/home/project-begin.view |
3543 | | - |
| 3544 | + url: https://panoramaweb.org/home/project-begin.view |
0 commit comments