About datasets with AlphaFold on contact map prediction

[YiningWang2]

Hello, quite great work you do. Recently I wanted to try your code on contact map prediction. I saw the link of ESMStructuralSplitDataset, but didn't find AlphaFold data. Can you release this data? Hope to get your reply. Thanks so much.

[elttaes]

Hi,
The Alphafold contact map training data is the same as ESMStructuralSplitDataset. I just combine the MSA and Contact map information into the pkl format which is required by Alphafold. I can try to upload it to google drive. When I finish I will tell you.

[YiningWang2]

Wow! Thanks so much for your helpful and quick reply.

[elttaes]

Hi,
The pkl files have already been uploaded to google drive(https://drive.google.com/drive/folders/1iShEW8NcMIlWqxTRgsEaI_t5ahoHsixt).
if there is any problem you can tell me.

[YiningWang2]

Get it! Thanks so much. But I have another question about the test dataset. Where can I get the test datasets on CASP14?

[elttaes]

Maybe "https://predictioncenter.org/download_area/CASP14/" including the contact label? I can't make sure.
But you can convert the 3D structure into a contact map.