ISPyB-membrane/index.html at master · emblsaxs/ISPyB-membrane · GitHub

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<!DOCTYPE html>
<html lang="en-us">
  <head>
    <meta charset="UTF-8">
    <title>Welcome to ISPyB collaboration pages</title>
    <meta name="viewport" content="width=device-width, initial-scale=1">
    <meta name="theme-color" content="#157878">
    <link href='https://fonts.googleapis.com/css?family=Open+Sans:400,700' rel='stylesheet' type='text/css'>
    <link rel="stylesheet" href="/ISPyB/assets/css/style.css?v=1b370e61e5b0f3b2a49a0069b510f78956fdd267">
  </head>
  <body>
    <section class="page-header">
      <img src = "webpages/transparent_logo_exi.png">
      <h1 class="project-name">ISPyB</h1>
      <h2 class="project-tagline"></h2>
        <a href="https://github.com/ispyb/ISPyB" class="btn">View on GitHub</a>
    </section>

    <section class="main-content">
      <h1 id="welcome-to-ispyb-collaboration-pages">Welcome to ISPyB collaboration pages</h1>

<p>ISPyB is a Laboratory Information Management System (LIMS) combining sample tracking and experiment reporting at synchrotron beamlines. It has been in production for many years, and is structured so as to make development and maintenance easy for software teams.</p>

<p>It was initially developed through a joint ESRF/e-HTPX  initiative in 2003.</p>

<p>In 2017, a collaboration agreement has been signed for the development of ISPyB between the major synchrotron facilities in Europe.</p>

<p>Today ISPyB is actively supported by the following partners:
 <a href="http://www.esrf.fr">ESRF</a>,
<a href="http://www.synchrotron-soleil.fr">Soleil</a>,
<a href="http://www.diamond.ac.uk/Home.html">DLS</a>,
<a href="http://www.maxlab.lu.se/">MAX IV</a>,
<a href="https://www.helmholtz-berlin.de/">HZB</a>,
<a href="http://www.embl.org">EMBL</a>,
<a href="http://www.globalphasing.com">Global Phasing Ltd</a>,
<a href="http://www.cells.es">ALBA</a>.
</p>

<h1 id="meetings-minutes">Meetings minutes</h1>
<ul>
  <li><a href="webpages/Monthly_meetings/2018/meetings2018.html">Monthly meetings 2018</a></li>
  <li><a href="webpages/Other_meetings/other_meetings.html">Others</a></li>
</ul>

<h1 id="meetings">F2F Meetings</h1>

<h2 id="gphl-dls-january-2018">GPhL/DLS January 2018</h2>


<p><img src="webpages/Diamond2018meeting/GroupPhoto.jpg" alt="group photo" /></p>

<h3 id="2018_meeting_background">Background</h3>

The meeting was held together with MXCuBE, with the following, joint <a href="webpages/Diamond2018meeting/Agenda for ISPyB-MXCuBE meeting Jan-Feb 2018 final.pdf">Agenda</a>.

This time the meeting was <a href="webpages/Diamond2018meeting/Proposed Agenda for ISPyB-MXCuBE meeting Jan-Feb 2018 v4.pdf">organised on different lines to previous years</a>, to put more emphasis on <a href="webpages/Diamond2018meeting/Background and suggestions for presentations ISPyB-MXCuBE meeting Jan-Feb 2018.pdf">the scientific goals of the project</a> and on how to make them feed through into the development priorities and the coordination of activities.

<h3 id="2018full-list-of-presentations">Full list of presentations</h3>

<h4 id="2018status-reports">Status reports</h4>

<ul>
  <li><a href="webpages/Diamond2018meeting/Updates/ispyb-status-emblhh.ppt">EMBL-HH BioSAXS</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/MXCUBE-ISPYB-Jan2018-Status.pdf">ESRF</a></li>
  <li>HZB - Presentation without slides</li>
  <li><a href="webpages/Diamond2018meeting/Updates/ISPYB-STATUS-ALBA-20180126.pptx">ALBA</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/elettra_slides_ispyb.pdf">ELETTRA</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/ISPyB Updates at Diamond.pdf">DLS</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/ispyb_pres-v1.pdf"/>MAX-IV</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/emblhh-ispyb-status-jan-2018.pptx">EMBL-HH</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/ANDREW - status update CRIMS ISPyB.ppt">EMBL-GR</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/StatusUpdate_ISPyBJan2018_Ed_Daniel.pptx">University of Oulu</a></li>
  <li><a href="webpages/Diamond2018meeting/Updates/GPhL_Vonrhein_autoPROC_Overview.pdf">GPhL</a></li>
</ul>

<h4 id="2018session_0">CryoEM in ISPyB</h4>

<ul>
  <li>Pablo Conesa: Introduction to Scipion</li>
  <li><a href="webpages/Diamond2018meeting/Session 0/CryoEM discussion.pdf">Connecting ISPyB and Scipion</a></li>
</ul>

<h4 id="2018Session_1">ISpyB development highlights</h4>

<ul>
  <li><a href="webpages/Diamond2018meeting/Session 1/Joint MxCuBE - ISPyB meeting DLS 2018 Alexa de Maria Antonlinos.pdf">cryo-EM status, and evolution of EXI</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 1/ExpDefXPDF.pptx">New column and tables for X-ray PDFs describing sample and capillary geometry</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 1/BioSaxxOnSwingBeamline.pptx">Implementation of membrane proteins in ISPyB-SAXS</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 1/ISPyB & Reprocessing.pdf">Auto(re)processing at DLS and presentation of results via ISPyB/SynchWeb</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 1/ISpyB-RB.pptx">Data Reprocessing and User Preferences implementation in ISPyB</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 1/GPhL_Vonrhein_autoPROC_Talk1.pdf">Data processing with autoPROC and STARANISO and requirements for the full visualisation of requirements via ISPyB</a></li>
</ul>

<h4 id="2018Session_2">Evolving scientific capabilities, logistical requirements and usere expectations</h4>

<ul>
  <li><a href="webpages/Diamond2018meeting/Session 2/ispyb2018-1.pptx">Specific needs of serial MX in relation to ISPyB</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 2/ISPyB MXCuBE meeting Andrea v7.pptx">Towards a standardised API for exchange between home labs and ISPyB</a></li>
  <li>Juan Sanchez-Weatherby: The VMX-i beamline and ISPyB</li>
  <li><a href="webpages/Diamond2018meeting/Session 2/Multipin_ISPYBMeeting_31012018.pptx">Managing high-density pins for the XChem facility with ISPyB</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 2/Instruct-ULTRA-ISPyB-v10.pptx">The Instruct-ULTRA project</a></li>
  <li><a href="webpages/Diamond2018meeting/Session 2/GPhL_Keller_ISPyB-2018-01.pdf">Presenting GPhL Workflow metadata in ISPyB</a></li>
</ul>

<h4 id="2018session_3">The ISpyB collaboration in action</h4>

<ul>
  <li><a href="webpages/Diamond2018meeting/Session 3/ESRF-ISPYB-Jan2018-How to work together.pdf">How to work together</a></li>
</ul>

<h4 id="2018-minutes-and-reports">Minutes and reports</h4>

<ul>
  <li><a href="webpages/Diamond2018meeting/Diamond2018_Dev_minutes.pdf">Developers Committee minutes</a></li>
  <li><a href="webpages/Diamond2018meeting/Diamond2018_minutes.pdf">Scientific/Steering Committee minutes</a></li>
</ul>

<hr />

<hr />


<h2 id="soleil-june-2017">SOLEIL June 2017</h2>
      <p>Presentations to be added soon </p>

<h2 id="esrf-january-1718-2017">ESRF January 17/18 2017</h2>
<img src = "webpages/2017-01-16_ISPYB MXCUBE-38.jpg">
<div class="highlighter-rouge"><pre class="highlight"><code>
1st ISPyB collaborative meeting.

</code></pre>
</div>

<p><a href="http://forge.epn-campus.eu/documents/872">-&gt; See presentations and minutes</a></p>

<h2 id="support-or-contact">Support or Contact</h2>

<p>You want more information about ISPyB, please contact: <a href="&#109;&#097;&#105;&#108;&#116;&#111;:&#105;&#115;&#112;&#121;&#098;&#046;&#099;&#111;&#110;&#116;&#097;&#099;&#116;&#064;&#103;&#109;&#097;&#105;&#108;&#046;&#099;&#111;&#109;">&#105;&#115;&#112;&#121;&#098;&#046;&#099;&#111;&#110;&#116;&#097;&#099;&#116;&#064;&#103;&#109;&#097;&#105;&#108;&#046;&#099;&#111;&#109;</a>.</p>
<p>You are interested in ISPyB news ? <a href="mailto:ispyb-news-subscribe@esrf.fr?subject=Please subscribe me to the ISPyB-news mailing list&body=Just send this email!">subscribe</a> to ISPyB information mailing list.</p>
<p>You are a developer and willing to participate to ISPyB development and discussions ? <a href="mailto:ispyb-dev-subscribe@esrf.fr?subject=Please subscribe me to the ISPyB-dev mailing list&body=Just send this email!">subscribe</a> to ISPyB developers mailing list.</p>

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