Newick parser error - "Couldnt find tip for seq1" ?

[tseemann]

$ cat test.fa
>seq1
ATCT
>seq2
ATCG
>seq3
ATAT

 $ cat test.nw
(seq1:0.1,(seq2:0.7,seq3:0.8));

Reading sequences from test.fa ... Read 3 sequences
First sequence is:seq1
Last  sequence is:seq3
Reading tree from test.nw ... Read tree with 2 tips
2       tip names have matching sequence names
0       tip names do not have matching sequence names
2       sequence names have matching tip names
1       sequence names do not have matching tip names
Couldnt find tip for seq1

[schultzm]

@tseemann If you add a branch length for the clade containing seq2 and seq3, the problem goes away. That is, it will work if you change your tree to something like (seq1:0.1,(seq2:0.7,seq3:0.8):3.0);

[tseemann]

@schultzm thanks! so the error is misleading. parser issues. i will patch my tests.