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Merge pull request #18 from eoap/develop
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‎.github/workflows/docs.yaml‎

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# Copyright 2025 Terradue
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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name: docs
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on:
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‎.github/workflows/package.yaml‎

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name: Publish to PyPI
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# Copyright 2025 Terradue
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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name: publish-to-pypi
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‎LICENSE‎

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‎NOTICE‎

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cwl2ogc
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Copyright 2025 Terradue.
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This product includes software developed at
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The Apache Software Foundation (http://www.apache.org/).

‎Taskfile.yaml‎

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# CWL2OGC (c) 2025
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# Copyright 2025 Terradue
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#
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#CWL2OGC is licensed under
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#Creative Commons Attribution-ShareAlike 4.0 International.
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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#You should have received a copy of the license along with this work.
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#If not, see <https://creativecommons.org/licenses/by-sa/4.0/>.
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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version: '3'
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‎docs/array-inputs.ipynb‎

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"cell_type": "code",
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"execution_count": 2,
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"id": "f5976049",
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"metadata": {},
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"outputs": [
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{
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"text": [
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"\u001b[32m2025-09-17 18:28:49.285\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_location\u001b[0m:\u001b[36m220\u001b[0m - \u001b[34m\u001b[1mLoading CWL document from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/array-inputs.cwl...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:49.719\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m223\u001b[0m - \u001b[34m\u001b[1mReading stream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/array-inputs.cwl...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:49.723\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_stream\u001b[0m:\u001b[36m197\u001b[0m - \u001b[34m\u001b[1mCWL data of type <class 'ruamel.yaml.comments.CommentedMap'> successfully loaded from stream\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:49.723\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m141\u001b[0m - \u001b[34m\u001b[1mUpdating the model of type 'CommentedMap' to version 'v1.2'...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:49.726\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m152\u001b[0m - \u001b[34m\u001b[1mRaw CWL document successfully updated to v1.2! Now converting to the CWL model...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:50.109\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m160\u001b[0m - \u001b[34m\u001b[1mRaw CWL document successfully updated to v1.2! Now dereferencing the steps[].run...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:50.110\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m170\u001b[0m - \u001b[34m\u001b[1msteps[].run successfully dereferenced! Now dereferencing the FQNs...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:50.110\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_clean_process\u001b[0m:\u001b[36m90\u001b[0m - \u001b[34m\u001b[1m Cleaning CommandLineTool array-inputs...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:50.110\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m175\u001b[0m - \u001b[34m\u001b[1mCWL document successfully dereferenced!\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:50.110\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m231\u001b[0m - \u001b[34m\u001b[1mStream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/array-inputs.cwl successfully load!\u001b[0m\n"
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"\u001b[32m2025-11-06 23:44:41.967\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_location\u001b[0m:\u001b[36m228\u001b[0m - \u001b[34m\u001b[1mLoading CWL document from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/array-inputs.cwl...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.500\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m231\u001b[0m - \u001b[34m\u001b[1mReading stream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/array-inputs.cwl...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.506\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_stream\u001b[0m:\u001b[36m203\u001b[0m - \u001b[34m\u001b[1mCWL data of type <class 'ruamel.yaml.comments.CommentedMap'> successfully loaded from stream\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.506\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m143\u001b[0m - \u001b[34m\u001b[1mNo needs to update the Raw CWL document since it targets already the v1.2\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.506\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m145\u001b[0m - \u001b[34m\u001b[1mParsing the raw CWL document to the CWL Utils DOM...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.822\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m158\u001b[0m - \u001b[34m\u001b[1mRaw CWL document successfully parsed to the CWL Utils DOM!\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.823\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m160\u001b[0m - \u001b[34m\u001b[1mDereferencing the steps[].run...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.823\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m167\u001b[0m - \u001b[34m\u001b[1msteps[].run successfully dereferenced! Dereferencing the FQNs...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.824\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m171\u001b[0m - \u001b[34m\u001b[1mCWL document successfully dereferenced! Now verifying steps[].run integrity...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.824\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m175\u001b[0m - \u001b[34m\u001b[1mAll steps[].run link are resolvable! \u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.824\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m178\u001b[0m - \u001b[34m\u001b[1mSorting Process instances by dependencies....\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.824\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m180\u001b[0m - \u001b[34m\u001b[1mSorting process is over.\u001b[0m\n",
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"\u001b[32m2025-11-06 23:44:42.824\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m240\u001b[0m - \u001b[34m\u001b[1mStream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/array-inputs.cwl successfully load!\u001b[0m\n"
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]
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}
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],
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"cell_type": "code",
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"execution_count": 3,
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"metadata": {},
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"outputs": [
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"execution_count": 4,
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"metadata": {},
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"outputs": [
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"version": "3.13.8"
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‎docs/complex-cwl-types.ipynb‎

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"\u001b[32m2025-09-17 18:28:38.788\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_location\u001b[0m:\u001b[36m220\u001b[0m - \u001b[34m\u001b[1mLoading CWL document from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/complex-cwl-types.cwl...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:39.039\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m223\u001b[0m - \u001b[34m\u001b[1mReading stream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/complex-cwl-types.cwl...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:39.052\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_stream\u001b[0m:\u001b[36m197\u001b[0m - \u001b[34m\u001b[1mCWL data of type <class 'ruamel.yaml.comments.CommentedMap'> successfully loaded from stream\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:39.052\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m141\u001b[0m - \u001b[34m\u001b[1mUpdating the model of type 'CommentedMap' to version 'v1.2'...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:39.055\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m152\u001b[0m - \u001b[34m\u001b[1mRaw CWL document successfully updated to v1.2! Now converting to the CWL model...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:40.007\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m160\u001b[0m - \u001b[34m\u001b[1mRaw CWL document successfully updated to v1.2! Now dereferencing the steps[].run...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:40.008\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m170\u001b[0m - \u001b[34m\u001b[1msteps[].run successfully dereferenced! Now dereferencing the FQNs...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:40.008\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_clean_process\u001b[0m:\u001b[36m90\u001b[0m - \u001b[34m\u001b[1m Cleaning CommandLineTool main...\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:40.009\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m175\u001b[0m - \u001b[34m\u001b[1mCWL document successfully dereferenced!\u001b[0m\n",
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"\u001b[32m2025-09-17 18:28:40.009\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m231\u001b[0m - \u001b[34m\u001b[1mStream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/complex-cwl-types.cwl successfully load!\u001b[0m\n"
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"\u001b[32m2025-11-06 23:45:17.733\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_location\u001b[0m:\u001b[36m228\u001b[0m - \u001b[34m\u001b[1mLoading CWL document from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/complex-cwl-types.cwl...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:45:18.239\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m231\u001b[0m - \u001b[34m\u001b[1mReading stream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/complex-cwl-types.cwl...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:45:18.247\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_stream\u001b[0m:\u001b[36m203\u001b[0m - \u001b[34m\u001b[1mCWL data of type <class 'ruamel.yaml.comments.CommentedMap'> successfully loaded from stream\u001b[0m\n",
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"\u001b[32m2025-11-06 23:45:18.247\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m143\u001b[0m - \u001b[34m\u001b[1mNo needs to update the Raw CWL document since it targets already the v1.2\u001b[0m\n",
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"\u001b[32m2025-11-06 23:45:18.247\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m145\u001b[0m - \u001b[34m\u001b[1mParsing the raw CWL document to the CWL Utils DOM...\u001b[0m\n",
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"\u001b[32m2025-11-06 23:45:19.001\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m158\u001b[0m - \u001b[34m\u001b[1mRaw CWL document successfully parsed to the CWL Utils DOM!\u001b[0m\n",
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"\u001b[32m2025-11-06 23:45:19.002\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m160\u001b[0m - \u001b[34m\u001b[1mDereferencing the steps[].run...\u001b[0m\n",
40+
"\u001b[32m2025-11-06 23:45:19.002\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m167\u001b[0m - \u001b[34m\u001b[1msteps[].run successfully dereferenced! Dereferencing the FQNs...\u001b[0m\n",
41+
"\u001b[32m2025-11-06 23:45:19.003\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m171\u001b[0m - \u001b[34m\u001b[1mCWL document successfully dereferenced! Now verifying steps[].run integrity...\u001b[0m\n",
42+
"\u001b[32m2025-11-06 23:45:19.003\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m175\u001b[0m - \u001b[34m\u001b[1mAll steps[].run link are resolvable! \u001b[0m\n",
43+
"\u001b[32m2025-11-06 23:45:19.003\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m178\u001b[0m - \u001b[34m\u001b[1mSorting Process instances by dependencies....\u001b[0m\n",
44+
"\u001b[32m2025-11-06 23:45:19.004\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36mload_cwl_from_yaml\u001b[0m:\u001b[36m180\u001b[0m - \u001b[34m\u001b[1mSorting process is over.\u001b[0m\n",
45+
"\u001b[32m2025-11-06 23:45:19.004\u001b[0m | \u001b[34m\u001b[1mDEBUG \u001b[0m | \u001b[36mcwl_loader\u001b[0m:\u001b[36m_load_cwl_from_stream\u001b[0m:\u001b[36m240\u001b[0m - \u001b[34m\u001b[1mStream from https://raw.githubusercontent.com/eoap/cwl2ogc/refs/heads/develop/tests/artifacts/cwl-types/complex-cwl-types.cwl successfully load!\u001b[0m\n"
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]
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}
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],
@@ -402,7 +405,7 @@
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],
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"metadata": {
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"kernelspec": {
405-
"display_name": "Python 3",
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"display_name": ".venv",
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"language": "python",
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"name": "python3"
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},
@@ -416,7 +419,7 @@
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.10.12"
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"version": "3.13.8"
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}
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},
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"nbformat": 4,

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