Remove R vs Julia transformation recommendations and fix KDE plot #19
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: '5 4 * * 1' | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| merge_group: | |
| workflow_dispatch: | |
| name: R-CMD-check | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| NOT_CRAN: true | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1.11' | |
| - name: Cache Julia packages | |
| uses: julia-actions/cache@v2 | |
| with: | |
| cache-name: julia-cache-artifacts | |
| cache-compiled: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, local::. | |
| needs: check | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: "" | |
| - name: Link conda for Julia (Unix) | |
| if: runner.os != 'Windows' | |
| run: | | |
| mkdir -p "$HOME/.julia/conda/3" | |
| ln -sf "$CONDA" "$HOME/.julia/conda/3/$(uname -m)" | |
| shell: bash | |
| - name: Link conda for Julia (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| New-Item -ItemType Directory -Force -Path "$env:USERPROFILE\.julia\conda\3" | |
| New-Item -ItemType Junction -Path "$env:USERPROFILE\.julia\conda\3\x86_64" -Target $env:CONDA | |
| shell: pwsh | |
| - name: Install JuliaCall dependencies (Unix) | |
| if: runner.os != 'Windows' | |
| run: | | |
| export R_HOME=$(R RHOME) | |
| julia -e 'ENV["R_HOME"] = raw"'"$R_HOME"'"; using Pkg; Pkg.add("Suppressor"); Pkg.add("RCall"); Pkg.build("RCall")' | |
| shell: bash | |
| - name: Install JuliaCall dependencies (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| $env:R_HOME = (& R.exe RHOME | Out-String).Trim() | |
| julia -e "ENV[`"R_HOME`"] = raw`"$env:R_HOME`"; using Pkg; Pkg.add(`"Suppressor`"); Pkg.add(`"RCall`"); Pkg.build(`"RCall`")" | |
| shell: pwsh | |
| - name: Preload Julia's libunwind (Linux workaround) | |
| if: runner.os == 'Linux' | |
| run: | | |
| # Workaround for JuliaCall issue #238 | |
| # Ubuntu's libunwind 1.6.2 has bugs. Preload Julia's own libunwind instead. | |
| JULIA_LIBUNWIND=$(find $(julia -e 'print(Sys.BINDIR)')/../lib/julia -name "libunwind.so.8*" 2>/dev/null | head -1) | |
| if [ -n "$JULIA_LIBUNWIND" ]; then | |
| echo "Preloading Julia's libunwind: $JULIA_LIBUNWIND" | |
| echo "LD_PRELOAD=$JULIA_LIBUNWIND" >> $GITHUB_ENV | |
| else | |
| echo "Warning: Julia's libunwind not found, may segfault" | |
| fi | |
| shell: bash | |
| - name: Setup Julia dependencies | |
| run: | | |
| forecastbaselines::setup_ForecastBaselines(verbose = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| error-on: '"error"' |