New feature: MEME-AME transcription factor motif enrichment with customizable background sequences#30

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fwzhao wants to merge 6 commits intoepigen:rGREAT_annotate_featuresfrom

fwzhao:rGREAT_annotate_features

Commits on Apr 1, 2025

Added meme-ame as feature for transcription factor motif enrichment
Fangwen Zhao
committed
more generate p_adj for returning sequences and genes in rgreat
Fangwen Zhao
committed
update to config.yaml for meme-ame
Fangwen Zhao
committed

Commits on Apr 2, 2025

updated such that meme_ame results aggregation and summary plots are also made, along with important additions to config file
Fangwen Zhao
committed

Commits on Apr 3, 2025

fixed empty results file handing for meme-ame
Fangwen Zhao
committed

Commits on Aug 6, 2025

Added addition of retrieving pycistarget motif hits
Fangwen Zhao
committed