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differences for PR #12
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config.yaml

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delays-functions.md

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@@ -151,8 +151,8 @@ epiparameter::generate(covid_serialint, times = 10)
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```
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``` output
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[1] 9.308061 2.510654 6.085556 3.305351 4.522049 4.436497 3.331934 7.850121
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[9] 3.323554 3.895433
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[1] 4.372758 7.814611 8.533213 4.522809 1.814634 8.579014 6.347100 2.995367
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[9] 4.588484 3.239379
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```
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::::::::: instructor
@@ -720,7 +720,17 @@ epinow_estimates_egi <- EpiNow2::epinow(
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generation_time = EpiNow2::generation_time_opts(serial_interval_ebola),
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delays = EpiNow2::delay_opts(incubation_period_ebola)
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)
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```
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``` output
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WARN [2025-10-13 18:41:29] epinow: There were 1 divergent transitions after warmup. See
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https://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
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to find out why this is a problem and how to eliminate them. -
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WARN [2025-10-13 18:41:29] epinow: Examine the pairs() plot to diagnose sampling problems
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-
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```
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``` r
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plot(epinow_estimates_egi)
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```
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