microhaplotopia/NAMESPACE at master · eriqande/microhaplotopia · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
# Generated by roxygen2: do not edit by hand

export(calculate_missing_data)
export(filter_bad_loci)
export(filter_missing_data)
export(filter_raw_microhap_data)
export(find_contaminated_samples)
export(find_duplicates)
export(find_missing_samples)
export(mhap_transform)
export(plot_run_statistics)
export(read_samplesheets)
export(read_unfiltered_observed)
export(resolve_duplicate_samples)
export(summarize_data)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,ends_with)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,recode)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(lubridate,mdy)
importFrom(magrittr,"%>%")
importFrom(readr,read_tsv)
importFrom(stringr,str_c)
importFrom(tibble,tibble)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(utils,write.table)