Running logmap's docker image over local track and getting 0 correspondences

[abhiseksharma]

Hi,

I was running logmap's docker image over local dataset, though there are no errors, getting 0 correspondences.

Please take a look at the below log and if you find something that maybe the issue please let me know.

WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
2022-09-28 16:55:16,871 INFO  MeltUtil                  - Welcome to
 __  __ ______ _   _______
|  \/  |  ____| | |__   __|
| \  / | |__  | |    | |
| |\/| |  __| | |    | |
| |  | | |____| |____| |
|_|  |_|______|______|_|    3.4-SNAPSHOT (git commit f281487)
2022-09-28 16:55:16,877 INFO  Track                     - Track cache folder is: C:\Users\user\oaei_track_cache
Recognized MELT WEB DOCKER package:
.\logmap-melt-oaei-2021-web-latest.tar.gz
2022-09-28 16:55:16,881 INFO  Main                      - Please make sure that docker is running on your system.
2022-09-28 16:55:17,785 INFO  MatcherDockerFile         - Connected to docker machine: docker-desktop
2022-09-28 16:55:17,785 INFO  MatcherDockerFile         - Load docker image from file .\logmap-melt-oaei-2021-web-latest.tar.gz to docker local registry. If image is already there, use constructor MatcherDockerFile(String imageName).
2022-09-28 16:55:21,952 INFO  MatcherDockerFile         - Starting container from image logmap-melt-oaei-2021-web (port 8080 from container is mapped to port 64007 in host)
2022-09-28 16:55:22,729 INFO  MatcherDockerFile         - Container started with id cff3121683ac3f1a0e2826cda9a293aaf3221ad31042ea52bb5ba2f0d47a154c
2022-09-28 16:55:22,731 INFO  Main                      - Running matching systems...
2022-09-28 16:55:22,752 INFO  ExecutionRunner           - Running matcher .\logmap-melt-oaei-2021-web-latest.tar.gz on testcase Local TC (track LocalTrack).
2022-09-28 16:55:23,103 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 170  in log                  - Logging initialized @381ms to org.eclipse.jetty.util.log.Slf4jLog
2022-09-28 16:55:23,208 INFO  MatcherHTTPCall           - Execute now the following HTTP request: POST http://localhost:64007/match HTTP/1.1
2022-09-28 16:55:23,226 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 68   in Main                 - Matching service runs at: http://localhost:8080/match
2022-09-28 16:55:23,229 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 375  in Server               - jetty-9.4.41.v20210516; built: 2021-05-16T23:56:28.993Z; git: 98607f93c7833e7dc59489b13f3cb0a114fb9f4c; jvm 1.8.0_212-b04
2022-09-28 16:55:23,240 INFO  RetryExec                 - I/O exception (java.net.SocketException) caught when processing request to {}->http://localhost:64007: Software caused connection abort: socket write error
2022-09-28 16:55:23,240 INFO  MatcherHTTPCall           - Endpoint is not ready / an exception occurred. Waiting 10 seconds. Trial 1/5
2022-09-28 16:55:23,277 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 916  in ContextHandler       - Started o.e.j.s.ServletContextHandler@5ae63ade{/,null,AVAILABLE}
2022-09-28 16:55:23,308 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 331  in AbstractConnector    - Started ServerConnector@5a61f5df{HTTP/1.1, (http/1.1)}{0.0.0.0:8080}
2022-09-28 16:55:23,308 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 415  in Server               - Started @586ms
2022-09-28 16:55:33,246 INFO  MatcherHTTPCall           - Execute now the following HTTP request: POST http://localhost:64007/match HTTP/1.1
2022-09-28 16:55:33,317 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 90   in Main                 - Got multipart request - start matching
2022-09-28 16:55:33,361 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 206  in Main                 - Server starts matcher class uk.ac.city.logmap.melt.LogMap_MELT for task:
Source:file:/tmp/MELT-fileupload8654086080574412052/source-8453155817845026653.rdf
Target:file:/tmp/MELT-fileupload8654086080574412052/target-1887410882821678633.rdf
InputAlignment:null
Parameter:null
2022-09-28 16:55:33,387 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 486  in Parameters           - Reading LogMap parameters from file.
2022-09-28 16:55:33,964 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 395  in LogMap2Core          - LogMap: ontology loading and overlapping extraction
2022-09-28 16:55:34,420 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:34 INFO  [qtp1748225580-19              ] 1307 in OWLRDFConsumer       - dumping remaining triples
2022-09-28 16:55:34,421 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:34 INFO  [qtp1748225580-19              ] 1341 in OWLRDFConsumer       - done dumping remaining triples
2022-09-28 16:55:35,061 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 1307 in OWLRDFConsumer       - dumping remaining triples
2022-09-28 16:55:35,065 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 1341 in OWLRDFConsumer       - done dumping remaining triples
2022-09-28 16:55:35,087 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 404  in LogMap2Core          - LogMap indexation
2022-09-28 16:55:35,208 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 423  in LogMap2Core          - LogMap anchor extraction
2022-09-28 16:55:35,219 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 428  in LogMap2Core          - LogMap class mapping extraction
2022-09-28 16:55:35,226 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 471  in LogMap2Core          - LogMap property mapping extraction
2022-09-28 16:55:35,324 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 479  in LogMap2Core          - LogMap instance mapping extraction
2022-09-28 16:55:35,325 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 39   in LogMap_MELT          - Matching with LogMap completed
2022-09-28 16:55:35,333 INFO  DockerLogCallback         - STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 158  in Main                 - Finished matching
2022-09-28 16:55:35,345 INFO  ExecutionRunner           - Running matcher .\logmap-melt-oaei-2021-web-latest.tar.gz on testcase Local TC (track LocalTrack) completed in 12 seconds.
2022-09-28 16:55:35,369 INFO  Main                      - Evaluating matching system results...
2022-09-28 16:55:35,587 INFO  EvaluatorCSV              - Evaluate matcher .\logmap-melt-oaei-2021-web-latest.tar.gz
2022-09-28 16:55:35,635 INFO  OntologyCacheJena         - Reading model into cache (file:/C:/Users/user/OneDrive/conference-conference-de-hi/source.rdf)
2022-09-28 16:55:35,745 INFO  OntologyCacheJena         - Reading model into cache (file:/C:/Users/user/OneDrive/conference-conference-de-hi/target.rdf)
2022-09-28 16:55:35,807 INFO  ExecutionRunner           - Running matcher baseLineMatcher on testcase Local TC (track LocalTrack).
2022-09-28 16:55:35,854 INFO  ExecutionRunner           - Running matcher baseLineMatcher on testcase Local TC (track LocalTrack) completed in 0 seconds.
2022-09-28 16:55:35,886 INFO  EvaluatorCSV              - Writing alignment cube
2022-09-28 16:55:35,886 INFO  AlignmentsCube            - Writing LocalTrack | Local TC | .\logmap-melt-oaei-2021-web-latest.tar.gz [to file: C:\Users\user\AppData\Local\Temp\melt-client-results-2315723151985622977\alignmentCube.csv]
Results written to: C:\Users\user\AppData\Local\Temp\melt-client-results-2315723151985622977
2022-09-28 16:55:35,933 INFO  Main                      -

Matcher: .\logmap-melt-oaei-2021-web-latest.tar.gz
Macro Precision: 0.0
Macro Recall: 0.0
Macro F1: 0.0
Micro Precision: 0.0
Micro Recall: 0.0
Micro F1: 0.0
Total Runtime (HH:MM:SS): 00:00:12
Since F1 is 0, you can find the full log of .\logmap-melt-oaei-2021-web-latest.tar.gz below:
2022-09-28 16:55:35,955 INFO  Main                      - STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 170  in log                  - Logging initialized @381ms to org.eclipse.jetty.util.log.Slf4jLog
STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 68   in Main                 - Matching service runs at: http://localhost:8080/match
STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 375  in Server               - jetty-9.4.41.v20210516; built: 2021-05-16T23:56:28.993Z; git: 98607f93c7833e7dc59489b13f3cb0a114fb9f4c; jvm 1.8.0_212-b04
STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 916  in ContextHandler       - Started o.e.j.s.ServletContextHandler@5ae63ade{/,null,AVAILABLE}
STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 331  in AbstractConnector    - Started ServerConnector@5a61f5df{HTTP/1.1, (http/1.1)}{0.0.0.0:8080}
STDOUT: 2022-09-28 11:25:23 INFO  [main                          ] 415  in Server               - Started @586ms
STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 90   in Main                 - Got multipart request - start matching
STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 206  in Main                 - Server starts matcher class uk.ac.city.logmap.melt.LogMap_MELT for task:
STDOUT: Source:file:/tmp/MELT-fileupload8654086080574412052/source-8453155817845026653.rdf
STDOUT: Target:file:/tmp/MELT-fileupload8654086080574412052/target-1887410882821678633.rdf
STDOUT: InputAlignment:null
STDOUT: Parameter:null
STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 486  in Parameters           - Reading LogMap parameters from file.
STDOUT: 2022-09-28 11:25:33 INFO  [qtp1748225580-19              ] 395  in LogMap2Core          - LogMap: ontology loading and overlapping extraction
STDOUT: 2022-09-28 11:25:34 INFO  [qtp1748225580-19              ] 1307 in OWLRDFConsumer       - dumping remaining triples
STDOUT: 2022-09-28 11:25:34 INFO  [qtp1748225580-19              ] 1341 in OWLRDFConsumer       - done dumping remaining triples
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 1307 in OWLRDFConsumer       - dumping remaining triples
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 1341 in OWLRDFConsumer       - done dumping remaining triples
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 404  in LogMap2Core          - LogMap indexation
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 423  in LogMap2Core          - LogMap anchor extraction
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 428  in LogMap2Core          - LogMap class mapping extraction
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 471  in LogMap2Core          - LogMap property mapping extraction
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 479  in LogMap2Core          - LogMap instance mapping extraction
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 39   in LogMap_MELT          - Matching with LogMap completed
STDOUT: 2022-09-28 11:25:35 INFO  [qtp1748225580-19              ] 158  in Main                 - Finished matching

2022-09-28 16:55:35,957 INFO  MatcherDockerFile         - JVM shutdown detected and container cff3121683ac3f1a0e2826cda9a293aaf3221ad31042ea52bb5ba2f0d47a154c is shut down now. Please call close method of MatcherDockerFile to remove this message.

Thanks
Abhisek

[abhiseksharma]

Hi,

If anything comes to your mind please let me know, it might give me some insight on something that I might be missing.

Thanks,
Abhisek

[ernestojimenezruiz]

Hi Abhisek It depends on the test case. It seems there is no error involved. Have you tried using LogMap without the dockerization? Ernesto El vie, 14 oct 2022 a las 20:53, Abhisek Sharma ***@***.***>) escribió:

…

Hi, If anything comes to your mind please let me know, it might give me some insight on something that I might be missing. Thanks, Abhisek — Reply to this email directly, view it on GitHub <#31 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADYLZ6UR6K7DQ7IQLVZ32BDWDG2Z5ANCNFSM6AAAAAAQXVWWOM> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

-- Ernesto Jiménez-Ruiz Lecturer in Artificial Intelligence Department of Computer Science School of Science & Technology City, University of London https://www.city.ac.uk/people/academics/ernesto-jimenez-ruiz