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Copy file name to clipboardExpand all lines: docs/services/jupyterlab.md
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@@ -72,7 +72,7 @@ Each time you start a JupyterHub server, you need to do the following in the Jup
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!!! important "pass a [`julia`][ref-uenv-julia] uenv and the view `jupyter`."
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At first time use of Julia within Jupyter, IJulia and one or more Julia kernel needs to be installed.
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Type the following command in a shell within JupyterHub to install IJulia, the default Julia kernel and, on systems whith Nvidia GPUs, a Julia kernel running under Nvidia Nsight Systems:
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Type the following command in a shell within JupyterHub to install IJulia, the default Julia kernel and, on systems with Nvidia GPUs, a Julia kernel running under Nvidia Nsight Systems:
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```console
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install_ijulia
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```
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MPI can be made available on Jupyter notebooks through [IPyParallel](https://github.com/ipython/ipyparallel). This is a Python package and collection of CLI scripts for controlling clusters for Jupyter: A set of servers that act as a cluster, called engines, is created and the code in the notebook's cells will be executed within them.
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We provide the python package [`ipcmagic`](https://github.com/eth-cscs/ipcluster_magic) to make easier the mangement of IPyParallel clusters. `ipcmagic` can be installed by the user with
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We provide the python package [`ipcmagic`](https://github.com/eth-cscs/ipcluster_magic) to make easier the management of IPyParallel clusters. `ipcmagic` can be installed by the user with
Copy file name to clipboardExpand all lines: docs/software/uenv/deploy.md
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@@ -106,11 +106,11 @@ However, it is not desirable to build every recipe on every possible target syst
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For example:
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* An ICON development environment would only be deployed on the weather and climate platform
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* A GROMACS recipe would not be deployed on the weather and climate platrofm
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* A GROMACS recipe would not be deployed on the weather and climate platform
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* Development builds only need to run on test and staging clusters
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A YAML file `config.yaml` is maintained in the [github.com/eth-cscs/alps-uenv](https://github.com/eth-cscs/alps-uenv/blob/main/config.yaml) repository that maps
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recipes to deployed versions on mucroarchitectures.
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recipes to deployed versions on microarchitectures.
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### Permissions
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* access to some packages is restricted by applying access rules to the package path
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* e.g. access to `uenv-sources/vasp` is restricted to members of the vasp6 group
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Permissons to acces restricted resources is set on a per-pipeline basis
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Permissions to access restricted resources is set on a per-pipeline basis
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* For example, only the `alps-uenv` pipeline has access to the VASP source code, while the [`uenv build`][ref-uenv-build] pipeline does not.
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| Package | Access | Path | Notes | Contact |
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|---------|--------|------|-------| ------- |
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|`cray-mpich`| anonymous |`uenv-sources/cray-mpich`|`cray-mpich`, `cray-gtl`, `cray-pals`, `cray-mpi`| Simon Pintarelli, Benjamin Comming|
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|`cray-mpich`| anonymous |`uenv-sources/cray-mpich`|`cray-mpich`, `cray-gtl`, `cray-pals`, `cray-mpi`| Simon Pintarelli, Benjamin Cumming|
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|`namd`|`uenv-sources-csstaff`|`uenv-sources/namd`| NAMD requires an account to download the source code | Rocco Meli |
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|`vasp`|`vasp6`, `cscs-uenv-admin`|`uenv-sources/vasp`| VASP requires a paid license to access source | Simon Frasch |
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|`vmd`|`uenv-sources-csstaff`|`uenv-sources/vmd`| VMD requires an account to download the source code | Alberto Invernizzi |
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