More typos and whitelist

Author: msimberg

.github/actions/spelling/allow.txt

@@ -121,6 +121,12 @@ gitlab
 gpu
 groundstate
 ijulia
+julia
+linalg
+linux
+nccl
+osts
+quantumespresso
 inodes
 iopsstor
 jfrog
@@ -202,3 +208,4 @@ xattr
 xattrs
 youtube
 zstd
+hdf

.github/actions/spelling/patterns.txt

@@ -23,3 +23,6 @@ https?:\/\/(www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b([-a-zA-Z0
 # kebab-case and snake_case words
 [a-z]+-[a-z-]+
 [a-z]+_[a-z_]+
+
+# versions
+[0-9]+\.[.0-9]+(\+[0-9a-z]+)?

docs/guides/storage.md

@@ -111,7 +111,7 @@ To set up a default so all newly created folders and dirs inside or your desired
     ```
 
 !!! info
-    For more information read the setfacl man page: `man setfacl`.
+    For more information read the `setfacl` man page: `man setfacl`.
 
 [](){#ref-guides-storage-lustre}
 ## Lustre tuning
@@ -124,7 +124,7 @@ Its performance is roughly the same on [Capstor][ref-alps-capstor] and [Iopsstor
 This data is globally synchronized, which means Lustre is not well suited to handling many small files, see the discussion on [how to handle many small files][ref-guides-storage-small-files].
 
 The data itself is subdivided in blocks of size `<blocksize>` and is stored by Object Storage Servers (OSS) in one or more Object Storage Targets (OST).
-The block size and number of OSTs to use is defined by the striping settings, which are applied to a path, with new files and directories ihneriting them from their parent directory.
+The block size and number of OSTs to use is defined by the striping settings, which are applied to a path, with new files and directories inheriting them from their parent directory.
 The `lfs getstripe <path>` command can be used to get information on the stripe settings of a path.
 For directories and empty files `lfs setstripe --stripe-count <count> --stripe-size <size> <directory/file>` can be used to set the layout.
 The simplest way to have the correct layout is to copy to a directory with the correct layout

docs/software/ml/pytorch.md

@@ -146,7 +146,7 @@ The PyTorch uenv is versioned according to the PyTorch version it provides.
         | `util-macros` | 1.20.1 |
         | `valgrind` | 3.23.0 |
         | `xpmem` | 2.9.6 |
-        | `x`z | 5.4.6 |
+        | `xz` | 5.4.6 |
         | `yasm` | 1.3.0 |
         | `zlib-ng` | 2.2.1 |
         | `zstd` | 1.5.6 |
@@ -378,7 +378,7 @@ srun bash -c "
    The `MASTER_ADDR`, `MASTER_PORT` and `WORLD_SIZE` variables are used to determine the address and port of the master node.
    Additionally we also need `RANK` and `LOCAL_RANK` but these must be set per-process, see below.
 4. Enable more graceful exception handling, see [PyTorch documentation](https://pytorch.org/docs/stable/torch_nccl_environment_variables.html)
-5. Set the Trition home to a local path (e.g. `/dev/shm`) to avoid writing to the (distributed) file system.
+5. Set the Triton home to a local path (e.g. `/dev/shm`) to avoid writing to the (distributed) file system.
    This is important for performance, as writing to the Lustre file system can be slow due to the amount of small files and potentially many processes accessing it.
 6. Disable GPU support in MPICH, as it [can lead to deadlocks](https://docs.nvidia.com/deeplearning/nccl/user-guide/docs/mpi.html#inter-gpu-communication-with-cuda-aware-mpi) when using together with nccl.
 7. Avoid writing JITed binaries to the (distributed) file system, which could lead to performance issues.

docs/storage/filesystems.md

@@ -89,7 +89,7 @@ See the [Lustre guide][ref-guides-storage-lustre] for some hints on how to get t
 All users on Alps get their own Scratch path, `/capstor/scratch/cscs/$USER`, which is pointed to by the variable `$SCRATCH` on the [HPC Platform][ref-platform-hpcp] and [Climate and Weather Platform][ref-platform-cwp] clusters Eiger, Daint and Santis.
 
 !!! info "`$SCRATCH` on MLP points to Iopsstor"
-    On the machine learning platform (MLP) systems [clariden][ref-cluster-clariden] and [bristen][ref-cluster-bristen] the `$SCRATCH` variable points to storage on [Iopstore][ref-alps-iopsstor].
+    On the machine learning platform (MLP) systems [clariden][ref-cluster-clariden] and [bristen][ref-cluster-bristen] the `$SCRATCH` variable points to storage on [Iopsstor][ref-alps-iopsstor].
     See the [MLP docs][ref-mlp-storage] for more information.
 
 ### Cleanup and expiration
@@ -337,7 +337,7 @@ In addition to the automatic deletion of old files, if occupancy exceeds 60% the
 ??? question "What do messages like `mkdir: cannot create directory 'test': Disk quota exceeded` mean?"
     You have run out of quota on the target file system.
     Consider deleting unneeded files, or moving data to a different file system.
-    Specifcially, if you see this message when using [Home][ref-storage-home], which has a relatively small 50 GB limit, consider moving the data to your project's [Store][ref-storage-store] path.
+    Specifically, if you see this message when using [Home][ref-storage-home], which has a relatively small 50 GB limit, consider moving the data to your project's [Store][ref-storage-store] path.
 
 !!! todo
     FAQ question: [writing with specific group access](https://confluence.cscs.ch/spaces/KB/pages/276955350/Writing+on+project+if+you+belong+to+more+than+one+group)