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Error when using setup_src_data() for "mimic"Β #80

@sitaomin1994

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@sitaomin1994
── Downloading 11 files for `mimic` ────────────────────────────────────────────────────────────────────────────
β€’ INPUTEVENTS_MV.csv.gz
β€’ LABEVENTS.csv.gz
β€’ MICROBIOLOGYEVENTS.csv.gz
β€’ NOTEEVENTS.csv.gz
β€’ OUTPUTEVENTS.csv.gz
β€’ PATIENTS.csv.gz
β€’ PRESCRIPTIONS.csv.gz
β€’ PROCEDUREEVENTS_MV.csv.gz
β€’ PROCEDURES_ICD.csv.gz
β€’ SERVICES.csv.gz
β€’ TRANSFERS.csv.gz
────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Comparing checksums
── Importing 26 tables for `mimic` ─────────────────────────────────────────────────────────────────────────────
chartevents pa… [===========>-------------------------------------------]  21%Error in setorderv(dat, sort_col) :
  some columns are not in the data.table: ITEMID
In addition: Warning message:
Encountered parsing problems for file CHARTEVENTS.csv.gz:
  β€’ [102348385, 6]: got '2179-09-18 1' instead of date like %Y-%m-%d
  %H:%M:%S
  β€’ [102348385, NA]: got '6 columns' instead of 15 columns
> import_src("mimic", "/mnt/d/min/data/icu/mimic-iii/")
── Importing 23 tables for `mimic` ─────────────────────────────────────────────────────────────────────────────
chartevents pa… [===========>-------------------------------------------]  21%Error in setorderv(dat, sort_col) :
  some columns are not in the data.table: ITEMID
In addition: Warning message:
Encountered parsing problems for file CHARTEVENTS.csv.gz:
  β€’ [102348385, 6]: got '2179-09-18 1' instead of date like %Y-%m-%d
  %H:%M:%S
  β€’ [102348385, NA]: got '6 columns' instead of 15 columns

ChartEvents cannot be imported

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