update cran-comments, etc

Author: ethanbass

.Rbuildignore

@@ -7,6 +7,7 @@
 ^\.Rhistory$
 ^.Rproj*$
 [.]DS_Store$
+^\.DS_Store$
 ^CRAN-SUBMISSION$
 ^cran-comments.md
 ^_pkgdown\.yml$

NEWS.md

@@ -139,7 +139,7 @@ toggle scaling of chromatograms resolving ([#30](https://github.com/ethanbass/ch
 
 ### Other Improvements
 
-* Improved automatic filetype detection by `read_chroms`.
+* Improved automatic file type detection by `read_chroms`.
 * Refactored `read_thermoraw` function to simplify paths.
 * The `thermoraw` and `openchrom` parsers now use a proper temp directory if an export directory is not specified through the `path_out` argument.
 * Re-factored `reshape_chroms`, speeding up conversion from wide to long format.

R/read_peaklist.R

@@ -2,7 +2,7 @@
 #'
 #' Reads peak lists from specified folders or vector of paths.
 #'
-#' @param paths Paths to files or folders containing peaklist files.
+#' @param paths Paths to files or folders containing peak list files.
 #' @param find_files Logical. Set to \code{TRUE} (default) if you are providing
 #' the function with a folder or vector of folders containing the files.
 #' Otherwise, set to\code{FALSE}.

cran-comments.md

@@ -1,23 +1,21 @@
-## Response to comments
-
-I've added single quotes around proper nouns in the package description, as requested by Uwe Ligges and pushed the version to 0.2.1. Thanks!
-
 ## R CMD check results
+
 There were no ERRORs or WARNINGs. 
 
-There were 2 NOTES:
+There were up to 2 NOTES (depending on the system where the package was checked):
+
+* Possibly misspelled words in DESCRIPTION:
+  chromConverter (19:42)
 
 * Suggests or Enhances not in mainstream repositories:
-  entab
+  entab, chromConverterExtraTests
 Availability using Additional_repositories specification:
-  entab   yes   https://ethanbass.github.io/drat/
+  entab                      yes   https://ethanbass.github.io/drat/
+  chromConverterExtraTests   yes   https://ethanbass.github.io/drat/
+  ?                            ?   https://ethanbass.r-universe.dev/
+
+Uses the non-portable package: ‘mzR’
 
-Entab is suggested but not required. It can be downloaded from my drat repository or from its official github page https://github.com/bovee/entab.
+"chromConverter"" is the name of the package and is not mis-spelled.  
 
-* Found the following (possibly) invalid URLs:
-  URL: https://doi.org/10.1021/acs.jproteome.9b00328
-    From: man/read_thermoraw.Rd
-    Status: 503
-    Message: Service Unavailable
-    
-The URL in question appears to be perfectly valid. At least it loads in the web browser just fine.
+Entab, mzR, and chromConverterExtraTests are not required. The Entab and chromConverterExtraTests packages can be installed from my drat repository or from my r-universe repository.