test-ci.sh

#!/bin/bash
#
# Copyright 2013-2026, Seqera Labs
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#

#
# setup env for integration tests
#
TEST_JDK=${TEST_JDK:=11}
X_BRANCH=${TRAVIS_BRANCH:-${CIRCLE_BRANCH:-'master'}}
X_PULL_REQUEST=${TRAVIS_PULL_REQUEST:-false}
## handle github variables
[[ $GITHUB_REF ]] && X_BRANCH=$(echo $GITHUB_REF | awk '{n=split($1,A,"/"); print A[n]}')
[[ $GITHUB_EVENT_NAME == pull_request ]] && X_PULL_REQUEST=true

export WITH_DOCKER='-with-docker'
export NXF_CMD=$PWD/nextflow;
export TEST_JDK
export TEST_MODE

(
 $NXF_CMD info
 cd validation
 bash -x test.sh
)