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It sounds like the spacy assemble behavior around performance metadata is inconsistent.

In general it makes sense to throw out all the performance metadata when using spacy assemble because the final pipeline might not include all the components from the original pipeline(s) and combining components in a different order (like senter vs. parser) can also affect the final performance. There's no way for spacy assemble to have the info to be able to combine these numbers -- you really need to run a new evaluation on the new pipeline.

We will take a look to see about making this more consistent and try to provide more info to users running spacy assemble so it's clear what to expect.

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@thomashacker
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feat / cli Feature: Command-line interface
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