Commit 9810a9f
Clean up quickstart tutorial: simplify code examples and remove unsupported API usage (#325)
Summary:
The quickstart tutorial contained outdated verbose patterns and incorrect API usage. This updates the tutorial to use current best practices with only supported API calls.
## Changes
- **Diagnostics section**: Replace 20+ lines of manual `model_matrix()` construction with simple `sample_with_target.covars().kld().T` (removed unsupported `use_model_matrix` parameter that was initially included but is not actually supported by the `covars().kld()` API)
- **Interaction terms section**: Removed entirely - the verbose manual string concatenation example has been deleted to simplify the tutorial
- **Evaluation section**: Removed incorrect examples using unsupported `use_model_matrix=True` parameter and removed duplicate `kld().T` calls. Now shows only the single correct `adjusted.covars().kld().T` call.
- **Structure**: Add "Visualizing the unadjusted comparison" sub-header before the first `plot()` call
Before:
```python
model_matrix_output = model_matrix(
sample_covars.df,
target_covars.df,
sample_covars.df.columns.tolist(),
return_type="two",
return_var_type="dataframe",
)
sample_mm = model_matrix_output["sample"]
target_mm = model_matrix_output["target"]
kld_mm = weighted_comparisons_stats.kld(...)
```
After:
```python
print(sample_with_target.covars().kld().T)
```
## Note
The `use_model_matrix` parameter exists in lower-level Balance functions but is not exposed through the `covars()` interface, so all examples now use only the supported default API.
<details>
<summary>Original prompt</summary>
>
> ----
>
> *This section details on the original issue you should resolve*
>
> <issue_title>[BUG] clean up quickstart</issue_title>
> <issue_description>From
> https://import-balance.org/docs/tutorials/quickstart/
>
> The section
> 'Diagnostics with and without a model matrix'
> Includes a lot of needless details:
> ```
>
> # Model-matrix diagnostics (explicit, aligned across sample/target)
> model_matrix_output = model_matrix(
> sample_covars.df,
> target_covars.df,
> sample_covars.df.columns.tolist(),
> return_type="two",
> return_var_type="dataframe",
> )
> sample_mm = model_matrix_output["sample"]
> target_mm = model_matrix_output["target"]
> kld_mm = weighted_comparisons_stats.kld(
> sample_mm,
> target_mm,
> sample_weights,
> target_weights,
> )
> print(kld_mm)
> ```
>
> It should only include an option of
>
> print(sample_with_target.covars().kld(use_model_matrix=True).T)
>
>
>
>
> Also, the section:
> 'Example: interaction term without using a model matrix'
> uses the verbose:
> ```
> sample_df = sample_covars.df.copy()
> target_df = target_covars.df.copy()
>
> sample_df['age_gender'] = sample_df['age_group'].astype(str) + ':' + sample_df['gender'].astype(str)
> target_df['age_gender'] = target_df['age_group'].astype(str) + ':' + target_df['gender'].astype(str)
>
> interaction_kld = weighted_comparisons_stats.kld(
> sample_df[['age_gender']],
> target_df[['age_gender']],
> sample_weights,
> target_weights,
> )
> print(interaction_kld)
> ```
>
> It should just use the formula argument when defining the sample_covars
>
>
> Also, the section:
> 'Evaluation of the Results'
> This option:
> `print(adjusted.covars().kld(aggregate_by_main_covar=True).T)`
> Should be replaced by this:
> `print(adjusted.covars().kld(use_model_matrix=True, aggregate_by_main_covar=True).T)`
> And it should be indicated that just using:
> `print(adjusted.covars().kld().T)`
> Gives the more correct results.
>
>
> Lastely,
> Before 'sample_with_target.covars().plot()'
> There should be a sub-header for this section.</issue_description>
>
> ## Comments on the Issue (you are copilot in this section)
>
> <comments>
> </comments>
>
</details>
- Fixes #324
---
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Pull Request resolved: #325
Differential Revision: D92654423
Pulled By: talgalili
fbshipit-source-id: b154c082ef1ce2ab608d46aee1a8e4d440ad65611 parent 6cb8a56 commit 9810a9f
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