Docker image

Author: Cyrille Pierre Henri Favreau

.github/workflows/docker_push.yml

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+on: [push]
+  
+jobs:
+  nuon_model_visualizer_job:
+    runs-on: ubuntu-latest
+    name: NuonModelVisualizer
+    steps:
+    - uses: actions/checkout@v2
+      name: Check out code
+    - name: Login to DockerHub
+      uses: docker/login-action@v1.8.0
+      with:
+        username: ${{ secrets.DOCKERHUB_USERNAME }}
+        password: ${{ secrets.DOCKERHUB_TOKEN }}
+    - name: Build and push Docker Python SDK image
+      uses: docker/build-push-action@v2
+      with:
+        context: .
+        push: true
+        tags: ${{ secrets.DOCKERHUB_ORGANIZATION }}/nuon-model-visualizer:latest
+    - name: Image digest
+      run: echo ${{ steps.docker_build.outputs.digest }}

.github/workflows/docker_tag.yml

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+on:
+  push:
+    tags:
+      - 1.*
+
+jobs:
+  bioexplorer_job:
+    runs-on: ubuntu-latest
+    name: NuonModelVisualizer
+    steps:
+    - uses: actions/checkout@v2
+      name: Check out code
+    - name: Get tag
+      id: tag
+      uses: dawidd6/action-get-tag@v1
+    - name: Use tag
+      run: echo ${{steps.tag.outputs.tag}}
+    - name: Login to DockerHub
+      uses: docker/login-action@v1.8.0
+      with:
+        username: ${{ secrets.DOCKERHUB_USERNAME }}
+        password: ${{ secrets.DOCKERHUB_TOKEN }}
+    - name: Build and push Docker Python SDK image
+      uses: docker/build-push-action@v2
+      with:
+        context: .
+        push: true
+        tags: ${{ secrets.DOCKERHUB_ORGANIZATION }}/nuon-model-visualizer:${{steps.tag.outputs.tag}}
+    - name: Image digest
+      run: echo ${{ steps.docker_build.outputs.digest }}

Dockerfile

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+
+# The Blue Brain BioExplorer is a tool for scientists to extract and analyse
+# scientific data from visualization
+#
+# Copyright 2020-2023 Blue BrainProject / EPFL
+# 
+# This program is free software: you can redistribute it and/or modify it under
+# the terms of the GNU General Public License as published by the Free Software
+# Foundation, either version 3 of the License, or (at your option) any later
+# version.
+#
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+# details.
+#
+# You should have received a copy of the GNU General Public License along with
+# this program.  If not, see <https://www.gnu.org/licenses/>.
+
+FROM python:3.10-slim as builder
+LABEL maintainer="cyrille.favreau@epfl.ch"
+
+ARG DIST_PATH=/app
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends wget git g++ gcc binutils libxpm-dev libxft-dev libxext-dev python3 libssl-dev && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# --------------------------------------------------------------------------------
+# Install ROOT
+# --------------------------------------------------------------------------------
+ARG ROOT_VERSION=6.30.04
+ARG ROOT_DIR=root_v${ROOT_VERSION}.Linux-ubuntu22.04-x86_64-gcc11.4
+ARG ROOT_PATH=/app/$ROOT_DIR
+
+RUN mkdir -p ${ROOT_PATH} \
+   && wget --no-verbose https://root.cern/download/${ROOT_DIR}.tar.gz \
+   && tar zxvf ${ROOT_DIR}.tar.gz -C ${ROOT_PATH} --strip-components=1 \
+   && rm ${ROOT_DIR}.tar.gz
+
+# Add ROOT bin to the PATH
+ENV PATH $PATH:${ROOT_PATH}/bin
+ENV PYTHONPATH $PYTHONPATH:${ROOT_PATH}/lib
+
+WORKDIR /app
+ADD . /app/NuonModelVisualizer
+
+RUN cd /app/NuonModelVisualizer && \
+    python3 -m venv /app/NuonModelVisualizer/env \
+    && . /app/NuonModelVisualizer/env/bin/activate \
+    && python3 -m pip install --upgrade pip --use-deprecated=legacy-resolver \
+    && python3 -m pip install wheel \
+    && python3 -m pip install -e .
+
+# --------------------------------------------------------------------------------
+# Install BioExplorer
+# https://github.com/favreau/BioExplorer
+# --------------------------------------------------------------------------------
+ARG BIOEXPLORER_SRC=/app/bioexplorer
+
+RUN mkdir -p ${BIOEXPLORER_SRC} \
+   && git clone https://github.com/favreau/BioExplorer.git ${BIOEXPLORER_SRC} \
+   && cd ${BIOEXPLORER_SRC}/bioexplorer/pythonsdk \
+   && . /app/NuonModelVisualizer/env/bin/activate \
+   && pip install . --use-deprecated=legacy-resolver \
+   && cd /app \
+   && rm -rf ${BIOEXPLORER_SRC}
+
+# --------------------------------------------------------------------------------
+# Install Rockets (from favreau for Python 3.10)
+# https://github.com/favreau/Rockets
+# --------------------------------------------------------------------------------
+ARG ROCKETS_SRC=/app/rockets
+
+RUN mkdir -p ${ROCKETS_SRC} \
+   && git clone https://github.com/favreau/Rockets.git ${ROCKETS_SRC} \
+   && cd ${ROCKETS_SRC}/python \
+   && . /app/NuonModelVisualizer/env/bin/activate \
+   && pip install . --use-deprecated=legacy-resolver \
+   && pip install numpy==1.22.4 \
+   && cd /app \
+   && rm -rf ${ROCKETS_SRC}
+
+RUN rm -rf /tmp/*
+
+ENV PATH /app/NuonModelVisualizer:$PATH
+
+RUN chmod +x /app/NuonModelVisualizer/nuon_model_visualizer_python_sdk
+
+# Expose a port from the container
+# For more ports, use the `--expose` flag when running the container,
+# see https://docs.docker.com/engine/reference/run/#expose-incoming-ports for docs.
+EXPOSE 8888
+
+ENTRYPOINT ["nuon_model_visualizer_python_sdk"]