Skip to content

Commit 800d7fc

Browse files
fbertranfbertran
committed
Regen pkgdown
1 parent 316c831 commit 800d7fc

File tree

5 files changed

+522
-538
lines changed

5 files changed

+522
-538
lines changed

‎DESCRIPTION‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -18,5 +18,5 @@ URL: https://fbertran.github.io/plsRglm/, https://github.com/fbertran/plsRglm/
1818
BugReports: https://github.com/fbertran/plsRglm/issues/
1919
VignetteBuilder: R.rsp
2020
Classification/MSC: 62J12, 62J99
21-
RoxygenNote: 7.3.2
21+
RoxygenNote: 7.3.3
2222
Config/testthat/edition: 3

‎README.md‎

Lines changed: 55 additions & 63 deletions
Original file line numberDiff line numberDiff line change
@@ -219,46 +219,38 @@ colSums(res6$pvalstep)
219219

220220
``` r
221221
res6$InfCrit
222-
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
223-
#> Nb_Comp_0 82.01205 NA NA NA NA 467.796667
224-
#> Nb_Comp_1 53.15173 0.8966556 0.0975 0.89665563 48.344150 35.742486
225-
#> Nb_Comp_2 41.08283 0.9175426 0.0975 0.20210989 28.518576 11.066606
226-
#> Nb_Comp_3 32.06411 0.9399676 0.0975 0.27195907 8.056942 4.418081
227-
#> Nb_Comp_4 33.76477 0.9197009 0.0975 -0.33759604 5.909608 4.309235
228-
#> Nb_Comp_5 33.34373 0.9281373 0.0975 0.10506161 3.856500 3.521924
229-
#> Nb_Comp_6 35.25533 0.9232562 0.0975 -0.06792167 3.761138 3.496074
230-
#> R2_Y R2_residY RSS_residY PRESS_residY Q2_residY LimQ2
231-
#> Nb_Comp_0 NA NA 11.00000000 NA NA NA
232-
#> Nb_Comp_1 0.9235940 0.9235940 0.84046633 1.13678803 0.89665563 0.0975
233-
#> Nb_Comp_2 0.9763431 0.9763431 0.26022559 0.67059977 0.20210989 0.0975
234-
#> Nb_Comp_3 0.9905556 0.9905556 0.10388893 0.18945488 0.27195907 0.0975
235-
#> Nb_Comp_4 0.9907882 0.9907882 0.10132947 0.13896142 -0.33759604 0.0975
236-
#> Nb_Comp_5 0.9924713 0.9924713 0.08281624 0.09068364 0.10506161 0.0975
237-
#> Nb_Comp_6 0.9925265 0.9925265 0.08220840 0.08844125 -0.06792167 0.0975
238-
#> Q2cum_residY AIC.std DoF.dof sigmahat.dof AIC.dof
239-
#> Nb_Comp_0 NA 37.010388 1.000000 6.5212706 46.0708838
240-
#> Nb_Comp_1 0.8966556 8.150064 2.740749 1.8665281 4.5699686
241-
#> Nb_Comp_2 0.9175426 -3.918831 5.085967 1.1825195 2.1075461
242-
#> Nb_Comp_3 0.9399676 -12.937550 5.121086 0.7488308 0.8467795
243-
#> Nb_Comp_4 0.9197009 -11.236891 5.103312 0.7387162 0.8232505
244-
#> Nb_Comp_5 0.9281373 -11.657929 6.006316 0.7096382 0.7976101
245-
#> Nb_Comp_6 0.9232562 -9.746328 7.000002 0.7633343 0.9711322
246-
#> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive
247-
#> Nb_Comp_0 47.7893514 27.59461 1 6.5212706 46.0708838 47.7893514
248-
#> Nb_Comp_1 4.9558156 21.34020 2 1.8905683 4.1699567 4.4588195
249-
#> Nb_Comp_2 2.3949331 27.40202 3 1.1088836 1.5370286 1.6860917
250-
#> Nb_Comp_3 0.9628191 24.40842 4 0.7431421 0.7363469 0.8256118
251-
#> Nb_Comp_4 0.9357846 24.23105 5 0.7846050 0.8721072 0.9964867
252-
#> Nb_Comp_5 0.9198348 28.21184 6 0.7661509 0.8804809 1.0227979
253-
#> Nb_Comp_6 1.1359502 33.18348 7 0.8361907 1.1070902 1.3048716
254-
#> GMDL.naive
255-
#> Nb_Comp_0 27.59461
256-
#> Nb_Comp_1 18.37545
257-
#> Nb_Comp_2 17.71117
258-
#> Nb_Comp_3 19.01033
259-
#> Nb_Comp_4 24.16510
260-
#> Nb_Comp_5 28.64206
261-
#> Nb_Comp_6 33.63927
222+
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y R2_Y
223+
#> Nb_Comp_0 82.01205 NA NA NA NA 467.796667 NA
224+
#> Nb_Comp_1 53.15173 0.8966556 0.0975 0.89665563 48.344150 35.742486 0.9235940
225+
#> Nb_Comp_2 41.08283 0.9175426 0.0975 0.20210989 28.518576 11.066606 0.9763431
226+
#> Nb_Comp_3 32.06411 0.9399676 0.0975 0.27195907 8.056942 4.418081 0.9905556
227+
#> Nb_Comp_4 33.76477 0.9197009 0.0975 -0.33759604 5.909608 4.309235 0.9907882
228+
#> Nb_Comp_5 33.34373 0.9281373 0.0975 0.10506161 3.856500 3.521924 0.9924713
229+
#> Nb_Comp_6 35.25533 0.9232562 0.0975 -0.06792167 3.761138 3.496074 0.9925265
230+
#> R2_residY RSS_residY PRESS_residY Q2_residY LimQ2 Q2cum_residY
231+
#> Nb_Comp_0 NA 11.00000000 NA NA NA NA
232+
#> Nb_Comp_1 0.9235940 0.84046633 1.13678803 0.89665563 0.0975 0.8966556
233+
#> Nb_Comp_2 0.9763431 0.26022559 0.67059977 0.20210989 0.0975 0.9175426
234+
#> Nb_Comp_3 0.9905556 0.10388893 0.18945488 0.27195907 0.0975 0.9399676
235+
#> Nb_Comp_4 0.9907882 0.10132947 0.13896142 -0.33759604 0.0975 0.9197009
236+
#> Nb_Comp_5 0.9924713 0.08281624 0.09068364 0.10506161 0.0975 0.9281373
237+
#> Nb_Comp_6 0.9925265 0.08220840 0.08844125 -0.06792167 0.0975 0.9232562
238+
#> AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive
239+
#> Nb_Comp_0 37.010388 1.000000 6.5212706 46.0708838 47.7893514 27.59461 1
240+
#> Nb_Comp_1 8.150064 2.740749 1.8665281 4.5699686 4.9558156 21.34020 2
241+
#> Nb_Comp_2 -3.918831 5.085967 1.1825195 2.1075461 2.3949331 27.40202 3
242+
#> Nb_Comp_3 -12.937550 5.121086 0.7488308 0.8467795 0.9628191 24.40842 4
243+
#> Nb_Comp_4 -11.236891 5.103312 0.7387162 0.8232505 0.9357846 24.23105 5
244+
#> Nb_Comp_5 -11.657929 6.006316 0.7096382 0.7976101 0.9198348 28.21184 6
245+
#> Nb_Comp_6 -9.746328 7.000002 0.7633343 0.9711322 1.1359502 33.18348 7
246+
#> sigmahat.naive AIC.naive BIC.naive GMDL.naive
247+
#> Nb_Comp_0 6.5212706 46.0708838 47.7893514 27.59461
248+
#> Nb_Comp_1 1.8905683 4.1699567 4.4588195 18.37545
249+
#> Nb_Comp_2 1.1088836 1.5370286 1.6860917 17.71117
250+
#> Nb_Comp_3 0.7431421 0.7363469 0.8256118 19.01033
251+
#> Nb_Comp_4 0.7846050 0.8721072 0.9964867 24.16510
252+
#> Nb_Comp_5 0.7661509 0.8804809 1.0227979 28.64206
253+
#> Nb_Comp_6 0.8361907 1.1070902 1.3048716 33.63927
262254
```
263255

264256
The number of significant predictors per components, which is a criteria of significance for [Bastien et al. (2005)](http://www.sciencedirect.com/science/article/pii/S0167947304000271), can be obtained via the following code:
@@ -368,15 +360,15 @@ res
368360
#> X6 5.5177190
369361
#> X7 -44.9000310
370362
#> Information criteria and Fit statistics:
371-
#> AIC RSS_Y R2_Y R2_residY RSS_residY AIC.std
372-
#> Nb_Comp_0 82.01205 467.79667 NA NA 11.0000000 37.010388
373-
#> Nb_Comp_1 53.15173 35.74249 0.923594 0.923594 0.8404663 8.150064
374-
#> DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive
375-
#> Nb_Comp_0 1.000000 6.521271 46.070884 47.789351 27.59461 1
376-
#> Nb_Comp_1 2.740749 1.866528 4.569969 4.955816 21.34020 2
377-
#> sigmahat.naive AIC.naive BIC.naive GMDL.naive
378-
#> Nb_Comp_0 6.521271 46.070884 47.78935 27.59461
379-
#> Nb_Comp_1 1.890568 4.169957 4.45882 18.37545
363+
#> AIC RSS_Y R2_Y R2_residY RSS_residY AIC.std DoF.dof
364+
#> Nb_Comp_0 82.01205 467.79667 NA NA 11.0000000 37.010388 1.000000
365+
#> Nb_Comp_1 53.15173 35.74249 0.923594 0.923594 0.8404663 8.150064 2.740749
366+
#> sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive
367+
#> Nb_Comp_0 6.521271 46.070884 47.789351 27.59461 1 6.521271 46.070884
368+
#> Nb_Comp_1 1.866528 4.569969 4.955816 21.34020 2 1.890568 4.169957
369+
#> BIC.naive GMDL.naive
370+
#> Nb_Comp_0 47.78935 27.59461
371+
#> Nb_Comp_1 4.45882 18.37545
380372
```
381373

382374
It is also possible to obtain the matrix W∗ with the following command line:
@@ -941,20 +933,20 @@ Stratified balanced bootstrap: CIs for each of the predictors distribution.
941933

942934
``` r
943935
confints.bootpls(bordeaux.bootYX1strata)
944-
#>
945-
#> 1|2 -5.2285517 1.8448908 -3.0266055 2.1579125 -6.6883385 -1.5038206
946-
#> 2|3 -1.4216229 4.9525537 -2.3021666 3.1831363 1.4147309 6.9000338
947-
#> Temperature -0.7320271 3.1003955 -1.6883027 2.0324540 1.0278307 4.7485873
948-
#> Sunshine -0.8132215 3.5499277 -0.7684357 2.2776395 1.1162563 4.1623315
949-
#> Heat -0.7762493 2.4414119 -1.4124977 1.6043794 0.5748209 3.5916981
950-
#> Rain -1.8637554 0.3290778 -1.4058759 0.4748013 -2.2942690 -0.4135918
951-
#>
952-
#> 1|2 -4.5562748 -1.3483662
953-
#> 2|3 1.2896677 4.7862147
954-
#> Temperature 0.9261003 3.2057586
955-
#> Sunshine 1.0299078 3.0499807
956-
#> Heat 0.5437488 2.7944714
957-
#> Rain -1.9548575 -0.3625478
936+
#>
937+
#> 1|2 -5.2285517 1.8448908 -3.0266055 2.1579125 -6.6883385 -1.5038206 -4.5562748
938+
#> 2|3 -1.4216229 4.9525537 -2.3021666 3.1831363 1.4147309 6.9000338 1.2896677
939+
#> Temperature -0.7320271 3.1003955 -1.6883027 2.0324540 1.0278307 4.7485873 0.9261003
940+
#> Sunshine -0.8132215 3.5499277 -0.7684357 2.2776395 1.1162563 4.1623315 1.0299078
941+
#> Heat -0.7762493 2.4414119 -1.4124977 1.6043794 0.5748209 3.5916981 0.5437488
942+
#> Rain -1.8637554 0.3290778 -1.4058759 0.4748013 -2.2942690 -0.4135918 -1.9548575
943+
#>
944+
#> 1|2 -1.3483662
945+
#> 2|3 4.7862147
946+
#> Temperature 3.2057586
947+
#> Sunshine 3.0499807
948+
#> Heat 2.7944714
949+
#> Rain -0.3625478
958950
#> attr(,"typeBCa")
959951
#> [1] TRUE
960952
```

0 commit comments

Comments
 (0)