Python tests

Update all non-major dependencies (#212) #584

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Run time

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Job	Run time
test (3.9, ubuntu-latest)	56s
test (3.10, ubuntu-latest)	54s
test (3.11, ubuntu-latest)	49s
test (3.12, ubuntu-latest)	59s
test (3.13, ubuntu-latest)	1m 9s
	4m 47s