Python tests

Update all non-major dependencies (#216) #586

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Run time

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Job	Run time
test (3.9, ubuntu-latest)	52s
test (3.10, ubuntu-latest)	1m 0s
test (3.11, ubuntu-latest)	53s
test (3.12, ubuntu-latest)	1m 1s
test (3.13, ubuntu-latest)	1m 13s
	4m 59s