Python tests

Update all non-major dependencies (#233) #667

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Run time

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Job	Run time
test (3.9, ubuntu-latest)	45s
test (3.10, ubuntu-latest)	43s
test (3.11, ubuntu-latest)	44s
test (3.12, ubuntu-latest)	47s
test (3.13, ubuntu-latest)	57s
	3m 56s