metaReportDiseaseCompensatory/daemon.sh at main · federedef/metaReportDiseaseCompensatory · GitHub

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#!/usr/bin/env bash

interester_layers=""

if [ $1 == "ld" ] ; then
	mkdir -p data_results
	# loading Gold standards:
	#------------------------#
	cp $SCRATCH/executions/GraphPrioritizer/report/zampieri/ranking_report/control_pos ./data_results/zampieri_pos
	cp $SCRATCH/executions/GraphPrioritizer/report/menche/ranking_report/control_pos ./data_results/buphamalai_pos
	cp $SCRATCH/executions/BackupGenes/report/ranking_report/control_pos ./data_results/compensation_pos

	# loading results
	#-----------------#
	# load data from GraphPrioritizer embeddings data
	cp $SCRATCH/executions/GraphPrioritizer/report/menche/kernel_report/parsed_uncomb_kernel_metrics ./data_results/embeddings_nonInt_stats
	cp $SCRATCH/executions/GraphPrioritizer/report/menche/kernel_report/parsed_comb_kernel_metrics ./data_results/embeddings_Int_stats
	# load buphamalai data
	cp $SCRATCH/executions/GraphPrioritizer/report/menche/ranking_report/parsed_non_integrated_rank_pos_cov ./data_results/buphamalai_nonInt_coverage
	cp $SCRATCH/executions/GraphPrioritizer/report/menche/ranking_report/parsed_integrated_rank_pos_cov ./data_results/buphamalai_Int_coverage
	# load zampieri data
	cp $SCRATCH/executions/GraphPrioritizer/report/zampieri/ranking_report/parsed_non_integrated_rank_pos_cov ./data_results/zampieri_nonInt_coverage
	cp $SCRATCH/executions/GraphPrioritizer/report/zampieri/ranking_report/parsed_integrated_rank_pos_cov ./data_results/zampieri_Int_coverage
	# load from compensatory data
	cp $SCRATCH/executions/BackupGenes/report/ranking_report/parsed_non_integrated_rank_pos_cov ./data_results/compensation_nonInt_coverage
	cp $SCRATCH/executions/BackupGenes/report/ranking_report/parsed_integrated_rank_pos_cov ./data_results/compensation_Int_coverage
fi

if [ $1 == "rp" ] ; then
# string_channels, original_databases
	source ~soft_bio_267/initializes/init_python
	name_dir=`date +%d_%m_%Y`
    mkdir -p ./meta_reports/
	mkdir -p ./meta_reports/$name_dir
	echo -e "$2" > data_results/selection
	report_html -t ./metareport.py -d `ls data_results/* | tr -s [:space:] "," | sed 's/,*$//g'` -o "${name_dir}_$2"
	mv ${name_dir}_$2.html ./meta_reports/$name_dir/
	rm data_results/selection
fi